| DNA mismatch repair protein Mlh1 (MutL protein homolog 1) | Mlh1 | Q9JK91 | 1 |
| DNA mismatch repair protein Msh2 (MutS protein homolog 2) | Msh2 | P43247 | 1 |
| DNA mismatch repair protein Msh3 (Protein repair-1) (REP-1) (Protein repair-3) (REP-3) | Msh3 Rep-3 | P13705 | 1 |
| DNA polymerase delta subunit 4 (DNA polymerase delta subunit p12) | Pold4 | Q9CWP8 | 1 |
| DNA polymerase subunit gamma-2, mitochondrial (EC 2.7.7.7) (DNA polymerase gamma accessory 55 kDa subunit) (p55) (Mitochondrial DNA polymerase accessory subunit) (MtPolB) (PolG-beta) | Polg2 Mtpolb | Q9QZM2 | 1 |
| DNA repair endonuclease XPF (EC 3.1.-.-) (DNA excision repair protein ERCC-4) | Ercc4 | Q9QZD4 | 1 |
| DNA repair protein RAD50 (RAD50 homolog (S. cerevisiae)) | Rad50 mCG_119249 | Q5SV02 | 1 |
| DNA repair protein RAD51 homolog 1 (RAD51 homolog A) | Rad51 Rad51a Reca | Q08297 | 1 |
| DNA replication complex GINS protein PSF1 (GINS complex subunit 1) | Gins1 Psf1 | Q9CZ15 | 1 |
| DNA replication complex GINS protein SLD5 (GINS complex subunit 4) [Cleaved into: DNA replication complex GINS protein SLD5, N-terminally processed] | Gins4 Sld5 | Q99LZ3 | 1 |
| DNA replication factor Cdt1 (Double parked homolog) (DUP) (Retroviral insertion site 2 protein) | Cdt1 Ris2 | Q8R4E9 | 1 |
| DNA replication licensing factor MCM2 (EC 3.6.4.12) (Minichromosome maintenance protein 2 homolog) (Nuclear protein BM28) | Mcm2 Bm28 Cdcl1 Kiaa0030 Mcmd2 | P97310 | 1 |
| DNA replication licensing factor MCM6 (EC 3.6.4.12) (Mis5 homolog) | Mcm6 Mcmd6 Mis5 | P97311 | 1 |
| DNA-(apurinic or apyrimidinic site) lyase 2 (EC 3.1.-.-) (EC 4.2.99.18) (APEX nuclease 2) (Apurinic-apyrimidinic endonuclease 2) (AP endonuclease 2) | Apex2 Ape2 | Q68G58 | 1 |
| DNA-directed RNA polymerase I subunit RPA1 (RNA polymerase I subunit A1) (EC 2.7.7.6) (DNA-directed RNA polymerase I largest subunit) (DNA-directed RNA polymerase I subunit A) (RNA polymerase I 194 kDa subunit) (RPA194) | Polr1a Rpa1 Rpo1-4 | O35134 | 1 |
| DNA-directed RNA polymerase I subunit RPA2 (RNA polymerase I subunit 2) (EC 2.7.7.6) (DNA-directed RNA polymerase I 135 kDa polypeptide) (RPA135) | Polr1b Rpa2 Rpo1-2 | P70700 | 1 |
| DNA-directed RNA polymerase II subunit GRINL1A (DNA-directed RNA polymerase II subunit M) (Glutamate receptor-like protein 1A) | Polr2m Grinl1a | Q6P6I6 | 1 |
| DNA-directed RNA polymerase II subunit RPB3 (Polymerase (RNA) II (DNA directed) polypeptide C) | Polr2c | Q99M46 | 1 |
| DNA-directed RNA polymerase III subunit RPC2 (RNA polymerase III subunit C2) (EC 2.7.7.6) (C128) (DNA-directed RNA polymerase III 127.6 kDa polypeptide) (DNA-directed RNA polymerase III subunit B) | Polr3b | P59470 | 1 |
| DNA-directed RNA polymerase III subunit RPC7 (RNA polymerase III subunit C7) (DNA-directed RNA polymerase III subunit G) | Polr3g | Q6NXY9 | 1 |
| DNA-directed RNA polymerase III subunit RPC8 (DNA-directed RNA polymerase III subunit H) (RNA polymerase III subunit C7) | Polr3h | Q9D2C6 | 1 |
| DNA-directed RNA polymerase III subunit RPC9 (RNA polymerase III subunit C9) (Calcitonin gene-related peptide-receptor component protein) (CGRP-RCP) (CGRP-receptor component protein) (CGRPRCP) | Crcp | O35427 | 1 |
| DNA-directed RNA polymerases I and III subunit RPAC1 (DNA-directed RNA polymerase I subunit C) (RNA polymerases I and III subunit AC1) (AC40) (DNA-directed RNA polymerases I and III 40 kDa polypeptide) (RPA40) (RPC40) | Polr1c Rpo1-1 | P52432 | 1 |
| DNA-directed RNA polymerases I, II, and III subunit RPABC3 (RNA polymerases I, II, and III subunit ABC3) (DNA-directed RNA polymerase II subunit H) (RPB17) (RPB8 homolog) | Polr2h | Q923G2 | 1 |
| DnaJ homolog subfamily B member 11 (APOBEC1-binding protein 2) (ABBP-2) (ER-associated DNAJ) (ER-associated Hsp40 co-chaperone) (Endoplasmic reticulum DNA J domain-containing protein 3) (ER-resident protein ERdj3) (ERdj3) (ERj3p) | Dnajb11 | Q99KV1 | 1 |
| DnaJ homolog subfamily B member 13 (Testis and spermatogenesis cell-related protein 6) (Testis spermatocyte apoptosis-related gene 6 protein) (Testis spermatogenesis apoptosis-related gene 3 protein) (Testis spermatogenesis apoptosis-related gene 6 protein) | Dnajb13 Tsarg Tsarg3 Tsarg6 | Q80Y75 | 1 |
| DnaJ homolog subfamily C member 12 (J domain-containing protein 1) | Dnajc12 Jdp1 | Q9R022 | 1 |
| DnaJ homolog subfamily C member 15 | Dnajc15 Dnajd1 | Q78YY6 | 1 |
| DnaJ homolog subfamily C member 18 | Dnajc18 | Q9CZJ9 | 1 |
| DnaJ homolog subfamily C member 28 | Dnajc28 ORF28 | Q8VCE1 | 1 |
| Docking protein 2 (Dok-related protein) (Dok-R) (Downstream of tyrosine kinase 2) (IL-four receptor-interacting protein) (FRIP) (p56(dok-2)) | Dok2 Frip | O70469 | 1 |
| Dolichol phosphate-mannose biosynthesis regulatory protein | Dpm2 | Q9Z324 | 1 |
| Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit (DDOST 48 kDa subunit) (Oligosaccharyl transferase 48 kDa subunit) (EC 2.4.99.18) | Ddost | O54734 | 1 |
| Dolichyldiphosphatase 1 (EC 3.6.1.43) (Dolichyl pyrophosphate phosphatase 1) (Protein 2-23) | Dolpp1 | Q9JMF7 | 1 |
| Double-stranded RNA-binding protein Staufen homolog 2 | Stau2 | Q8CJ67 | 1 |
| Doublesex- and mab-3-related transcription factor 2 (Doublesex-like 2 protein) (Terra) | Dmrt2 | Q8BG36 | 1 |
| Down syndrome critical region protein 3 homolog (Down syndrome critical region protein A homolog) | Dscr3 Dcra Dscra | O35075 | 1 |
| DPH3 homolog (CSL-type zinc finger-containing protein 2) (DelGEF-interacting protein 1) (DelGIP1) | Dph3 Desr1 Zcsl2 | Q8K0W9 | 1 |
| DTW domain-containing protein 1 | Dtwd1 | Q9D8U7 | 1 |
| Dual serine/threonine and tyrosine protein kinase (EC 2.7.12.1) (Dusty protein kinase) (Dusty PK) (Receptor-interacting serine/threonine-protein kinase 5) | Dstyk Ripk5 | Q6XUX1 | 1 |
| Dual specificity mitogen-activated protein kinase kinase 6 (MAP kinase kinase 6) (MAPKK 6) (EC 2.7.12.2) (MAPK/ERK kinase 6) (MEK 6) (SAPKK3) | Map2k6 Prkmk6 Sapkk3 | P70236 | 1 |
| Dual specificity protein phosphatase 1 (EC 3.1.3.16) (EC 3.1.3.48) (Mitogen-activated protein kinase phosphatase 1) (MAP kinase phosphatase 1) (MKP-1) (Protein-tyrosine phosphatase 3CH134) (Protein-tyrosine phosphatase ERP) | Dusp1 3ch134 Mkp1 Ptpn10 Ptpn16 | P28563 | 1 |
| Dual specificity protein phosphatase 10 (EC 3.1.3.16) (EC 3.1.3.48) (Mitogen-activated protein kinase phosphatase 5) (MAP kinase phosphatase 5) (MKP-5) | Dusp10 Mkp5 | Q9ESS0 | 1 |
| Dual specificity protein phosphatase 14 (EC 3.1.3.16) (EC 3.1.3.48) (Mitogen-activated protein kinase phosphatase 6) (MAP kinase phosphatase 6) (MKP-6) | Dusp14 Mkp6 | Q9JLY7 | 1 |
| Dual specificity protein phosphatase CDC14A (EC 3.1.3.16) (EC 3.1.3.48) (CDC14 cell division cycle 14 homolog A) | Cdc14a | Q6GQT0 | 1 |
| Duffy antigen/chemokine receptor (CD antigen CD234) | Darc Ackr1 Dfy Fy | Q9QUI6 | 1 |
| Dynamin-1 (EC 3.6.5.5) | Dnm1 Dnm Kiaa4093 | P39053 | 1 |
| Dynein assembly factor 1, axonemal (Leucine-rich repeat-containing protein 50) | Dnaaf1 Lrrc50 | Q9D2H9 | 1 |
| Dynein light chain 1, axonemal | Dnal1 Dnalc1 | Q05A62 | 1 |
| Dynein light chain 1, cytoplasmic (8 kDa dynein light chain) (DLC8) (Dynein light chain LC8-type 1) (Protein inhibitor of neuronal nitric oxide synthase) (PIN) (mPIN) | Dynll1 Dlc1 Dncl1 Dnclc1 | P63168 | 1 |
| Dynein light chain roadblock-type 1 (Dynein light chain 2A, cytoplasmic) | Dynlrb1 Dncl2a Dnlc2a | P62627 | 1 |
| Dynein light chain Tctex-type 1 (Activator of G-protein signaling 2) (AGS2) (T-complex testis-specific protein 1) (TCTEX-1) | Dynlt1 Tctel1 Tctex-1 Tctex1 | P51807 | 1 |
| Dystonin | Dst | E9PXE5 | 1 |
| Dystrobrevin beta (DTN-B) (mDTN-B) (Beta-dystrobrevin) | Dtnb | O70585 | 1 |
| Dystrophin-related protein 2 (DRP-2) | Drp2 | Q05AA6 | 1 |
| E3 ubiquitin-protein ligase AMFR (EC 6.3.2.-) (Autocrine motility factor receptor) (AMF receptor) | Amfr | Q9R049 | 1 |
| E3 ubiquitin-protein ligase BRE1A (BRE1-A) (EC 6.3.2.-) (RING finger protein 20) | Rnf20 Bre1a Kiaa4116 | Q5DTM8 | 1 |
| E3 ubiquitin-protein ligase BRE1B (BRE1-B) (EC 6.3.2.-) (RING finger protein 40) | Rnf40 Bre1b Kiaa0661 | Q3U319 | 1 |
| E3 ubiquitin-protein ligase DTX3L (EC 6.3.2.-) (Protein deltex-3-like) | Dtx3l Bbap | Q3UIR3 | 1 |
| E3 ubiquitin-protein ligase DTX4 (EC 6.3.2.-) (Protein deltex-4) (Deltex4) | Dtx4 | Q6PDK8 | 1 |
| E3 ubiquitin-protein ligase Hakai (EC 6.3.2.-) (Casitas B-lineage lymphoma-transforming sequence-like protein 1) (E-cadherin binding protein E7) (c-Cbl-like protein 1) | Cbll1 Hakai | Q9JIY2 | 1 |
| E3 ubiquitin-protein ligase HECTD3 (EC 6.3.2.-) (HECT domain-containing protein 3) | Hectd3 | Q3U487 | 1 |
| E3 ubiquitin-protein ligase HECW2 (EC 6.3.2.-) (HECT, C2 and WW domain-containing protein 2) (NEDD4-like E3 ubiquitin-protein ligase 2) | Hecw2 Kiaa1301 Nedl2 | Q6I6G8 | 1 |
| E3 ubiquitin-protein ligase HUWE1 (EC 6.3.2.-) (E3Histone) (HECT, UBA and WWE domain-containing protein 1) (Upstream regulatory element-binding protein 1) (URE-B1) (URE-binding protein 1) | Huwe1 Kiaa0312 Ureb1 | Q7TMY8 | 1 |
| E3 ubiquitin-protein ligase MARCH9 (EC 6.3.2.-) (Membrane-associated RING finger protein 9) (Membrane-associated RING-CH protein IX) (MARCH-IX) | 41342 | Q3TZ87 | 1 |
| E3 ubiquitin-protein ligase MIB1 (EC 6.3.2.-) (DAPK-interacting protein 1) (DIP-1) (Mind bomb homolog 1) | Mib1 Dip1 Kiaa1323 Mib | Q80SY4 | 1 |
| E3 ubiquitin-protein ligase MYLIP (EC 6.3.2.-) (Inducible degrader of the LDL-receptor) (Idol) (Myosin regulatory light chain-interacting protein) (MIR) | Mylip | Q8BM54 | 1 |
| E3 ubiquitin-protein ligase NRDP1 (EC 6.3.2.-) (RING finger protein 41) | Rnf41 Flrf Nrdp1 | Q8BH75 | 1 |
| E3 ubiquitin-protein ligase PDZRN3 (EC 6.3.2.-) (PDZ domain-containing RING finger protein 3) (Semaphorin cytoplasmic domain-associated protein 3) (Protein SEMACAP3) | Pdzrn3 Kiaa1095 Semcap3 | Q69ZS0 | 1 |
| E3 ubiquitin-protein ligase RNF128 (EC 6.3.2.-) (Gene related to anergy in lymphocytes protein) (Goliath-related E3 ubiquitin-protein ligase 1) (RING finger protein 128) | Rnf128 Grail Greul1 MNCb-3816 | Q9D304 | 1 |
| E3 ubiquitin-protein ligase RNF13 (EC 6.3.2.-) (RING finger protein 13) | Rnf13 Rzf | O54965 | 1 |
| E3 ubiquitin-protein ligase RNF130 (EC 6.3.2.-) (G1-related zinc finger protein) (Goliath homolog) (RING finger protein 130) | Rnf130 G1rp | Q8VEM1 | 1 |
| E3 ubiquitin-protein ligase RNF139 (EC 6.3.2.-) (RING finger protein 139) (Translocation in renal carcinoma on chromosome 8 protein) | Rnf139 | Q7TMV1 | 1 |
| E3 ubiquitin-protein ligase RNF170 (EC 6.3.2.-) (RING finger protein 170) | Rnf170 | Q8CBG9 | 1 |
| E3 ubiquitin-protein ligase RNF181 (EC 6.3.2.-) (RING finger protein 181) | Rnf181 | Q9CY62 | 1 |
| E3 ubiquitin-protein ligase RNF19B | Rnf19b | E9Q2L7 | 1 |
| E3 ubiquitin-protein ligase RNF216 (EC 6.3.2.-) (RING finger protein 216) (Triad domain-containing protein 3) (UbcM4-interacting protein 83) (Ubiquitin-conjugating enzyme 7-interacting protein 1) | Rnf216 Triad3 Ubce7ip1 Uip83 Zin | P58283 | 1 |
| E3 ubiquitin-protein ligase RNF31 (EC 6.3.2.-) (HOIL-1-interacting protein) (HOIP) (Putative Ariadne-like ubiquitin ligase) (PAUL) (RING finger protein 31) | Rnf31 Paul | Q924T7 | 1 |
| E3 ubiquitin-protein ligase SHPRH (EC 3.6.4.-) (EC 6.3.2.-) (SNF2, histone-linker, PHD and RING finger domain-containing helicase) | Shprh | Q7TPQ3 | 1 |
| E3 ubiquitin-protein ligase synoviolin (EC 6.3.2.-) (Synovial apoptosis inhibitor 1) | Syvn1 Hrd1 Kiaa1810 | Q9DBY1 | 1 |
| E3 ubiquitin-protein ligase TRAF7 | Traf7 | F8WJF7 | 1 |
| E3 ubiquitin-protein ligase TRIM13 (EC 6.3.2.-) (Putative tumor suppressor RFP2) (Ret finger protein 2) (Tripartite motif-containing protein 13) | Trim13 Rfp2 | Q9CYB0 | 1 |
| E3 ubiquitin-protein ligase TRIM32 (EC 6.3.2.-) (Tripartite motif-containing protein 32) | Trim32 | Q8CH72 | 1 |
| E3 ubiquitin-protein ligase TRIM33 (EC 6.3.2.-) (Ectodermin homolog) (Transcription intermediary factor 1-gamma) (TIF1-gamma) (Tripartite motif-containing protein 33) | Trim33 Kiaa1113 | Q99PP7 | 1 |
| E3 ubiquitin-protein ligase TRIM37 (EC 6.3.2.-) (Tripartite motif-containing protein 37) | Trim37 Kiaa0898 | Q6PCX9 | 1 |
| E3 ubiquitin-protein ligase TRIM41 (EC 6.3.2.-) (Tripartite motif-containing protein 41) | Trim41 | Q5NCC3 | 1 |
| E3 ubiquitin-protein ligase XIAP (EC 6.3.2.-) (Baculoviral IAP repeat-containing protein 4) (IAP homolog A) (Inhibitor of apoptosis protein 3) (IAP-3) (mIAP-3) (mIAP3) (X-linked inhibitor of apoptosis protein) (X-linked IAP) | Xiap Aipa Api3 Birc4 Miha | Q60989 | 1 |
| E3 ubiquitin-protein ligase ZNRF2 (EC 6.3.2.-) (Zinc/RING finger protein 2) | Znrf2 | Q71FD5 | 1 |
| E3 ubiquitin/ISG15 ligase TRIM25 (EC 6.3.2.19) (EC 6.3.2.n3) (Estrogen-responsive finger protein) (Tripartite motif-containing protein 25) (Ubiquitin/ISG15-conjugating enzyme TRIM25) (Zinc finger protein 147) | Trim25 Efp Zfp147 Znf147 | Q61510 | 1 |
| EAT-2-related transducer (EAT-2B) (Protein Sh2d1b2) | Sh2d1b2 Sh2d1c | Q45HK4 | 1 |
| Echinoderm microtubule-associated protein-like 1 (EMAP-1) | Eml1 | Q05BC3 | 1 |
| Ecotropic viral integration site 5 protein | Evi5 | F8VPT6 | 1 |
| Ecto-NOX disulfide-thiol exchanger 2 (APK1 antigen) (Cytosolic ovarian carcinoma antigen 1) (Tumor-associated hydroquinone oxidase) (tNOX) [Includes: Hydroquinone [NADH] oxidase (EC 1.-.-.-); Protein disulfide-thiol oxidoreductase (EC 1.-.-.-)] | Enox2 Cova1 | Q8R0Z2 | 1 |
| Ectoderm-neural cortex protein 1 (ENC-1) | Enc1 Enc-1 | O35709 | 1 |
| Ectonucleoside triphosphate diphosphohydrolase 4 (NTPDase 4) (EC 3.6.1.6) (Lysosomal apyrase-like protein of 70 kDa) (Uridine-diphosphatase) (UDPase) | Entpd4 Lalp70 Lysal1 | Q9DBT4 | 1 |
| Ectonucleoside triphosphate diphosphohydrolase 6, isoform CRA_a (Protein Entpd6) | Entpd6 mCG_16316 | Q3U0P5 | 1 |
| Ectonucleoside triphosphate diphosphohydrolase 7 (NTPDase 7) (EC 3.6.1.-) (Lysosomal apyrase-like protein 1) | Entpd7 Kiaa4066 Lalp1 | Q3TCT4 | 1 |
| Ectonucleotide pyrophosphatase/phosphodiesterase family member 2 (E-NPP 2) (EC 3.1.4.39) (Autotaxin) (Extracellular lysophospholipase D) (LysoPLD) | Enpp2 Npps2 Pdnp2 | Q9R1E6 | 1 |
| EGF-containing fibulin-like extracellular matrix protein 1 (Fibulin-3) (FIBL-3) | Efemp1 Fbln3 | Q8BPB5 | 1 |
| EH domain-containing protein 4 (PAST homolog 2) (mPAST2) | Ehd4 Past2 | Q9EQP2 | 1 |