| Protein Zfp97 | Zfp97 Zfp960 | E9PZP6 | 1 |
| Protein Zfr2 | Zfr2 | E9Q5M4 | 1 |
| Protein Zscan22 | Zscan22 Hkr2 | Q8BGS5 | 1 |
| Protein-arginine deiminase type-4 (EC 3.5.3.15) (Peptidylarginine deiminase IV) (Protein-arginine deiminase type IV) | Padi4 Pdi4 | Q9Z183 | 1 |
| Protein-cysteine N-palmitoyltransferase HHAT-like protein (Glycerol uptake/transporter homolog) (Hedgehog acyltransferase-like protein) | Hhatl Gup1 Kiaa1173 | Q9D1G3 | 1 |
| Protein-L-isoaspartate O-methyltransferase domain-containing protein 2 | Pcmtd2 | Q8BHD8 | 1 |
| Protein-S-isoprenylcysteine O-methyltransferase (EC 2.1.1.100) (Isoprenylcysteine carboxylmethyltransferase) (Prenylated protein carboxyl methyltransferase) (PPMT) (Prenylcysteine carboxyl methyltransferase) (pcCMT) | Icmt | Q9EQK7 | 1 |
| Protein-tyrosine kinase 2-beta (EC 2.7.10.2) (Calcium-dependent tyrosine kinase) (CADTK) (Calcium-regulated non-receptor proline-rich tyrosine kinase) (Cell adhesion kinase beta) (CAK-beta) (CAKB) (Focal adhesion kinase 2) (FADK 2) (Proline-rich tyrosine kinase 2) (Related adhesion focal tyrosine kinase) (RAFTK) | Ptk2b Fak2 Pyk2 Raftk | Q9QVP9 | 1 |
| Protein-tyrosine sulfotransferase 1 (EC 2.8.2.20) (Tyrosylprotein sulfotransferase 1) (TPST-1) | Tpst1 | O70281 | 1 |
| Proteinase-activated receptor 1 (PAR-1) (Thrombin receptor) | F2r Cf2r Par1 | P30558 | 1 |
| Proteinase-activated receptor 4 (PAR-4) (Coagulation factor II receptor-like 3) (Thrombin receptor-like 3) | F2rl3 Par4 | O88634 | 1 |
| Proteolipid protein 2 | Plp2 | Q9R1Q7 | 1 |
| Protocadherin gamma-A4 (PCDH-gamma-A4) | Pcdhga4 | Q91XY4 | 1 |
| Protocadherin-19 | Pcdh19 Kiaa1313 | Q80TF3 | 1 |
| Proton-coupled amino acid transporter 2 (Proton/amino acid transporter 2) (Solute carrier family 36 member 2) (Tramdorin-1) | Slc36a2 Pat2 Tramd1 | Q8BHK3 | 1 |
| PTB domain-containing engulfment adapter protein 1 (Cell death protein 6 homolog) (PTB domain adapter protein CED-6) (Protein GULP) | Gulp1 Ced6 | Q8K2A1 | 1 |
| Pterin-4-alpha-carbinolamine dehydratase 2 (PHS 2) (EC 4.2.1.96) (4-alpha-hydroxy-tetrahydropterin dehydratase 2) (DcoH-like protein DCoHm) (Dimerization cofactor of hepatocyte nuclear factor 1 from muscle) (HNF-1-alpha dimerization cofactor) | Pcbd2 Dcoh2 Dcohm | Q9CZL5 | 1 |
| Pulmonary surfactant-associated protein D (PSP-D) (SP-D) (Lung surfactant protein D) | Sftpd Sftp4 | P50404 | 1 |
| Purine-rich element-binding protein gamma | Purg | Q8R4E6 | 1 |
| Putative adenosylhomocysteinase 2 (AdoHcyase 2) (EC 3.3.1.1) (IP3R-binding protein released with inositol 1,4,5-trisphosphate) (S-adenosyl-L-homocysteine hydrolase 2) (S-adenosylhomocysteine hydrolase-like protein 1) | Ahcyl1 Irbit | Q80SW1 | 1 |
| Putative ATP-dependent RNA helicase DHX33 (EC 3.6.4.13) (DEAH box protein 33) | Dhx33 | Q80VY9 | 1 |
| Putative ATP-dependent RNA helicase Pl10 (EC 3.6.4.13) | D1Pas1 Pl10 | P16381 | 1 |
| Putative deoxyribose-phosphate aldolase (DERA) (EC 4.1.2.4) (2-deoxy-D-ribose 5-phosphate aldolase) (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) | Dera | Q91YP3 | 1 |
| Putative E3 ubiquitin-protein ligase UNKL (EC 6.3.2.-) (RING finger protein unkempt-like) | Unkl | Q5FWH2 | 1 |
| Putative GTP-binding protein 6 | Gtpbp6 | Q3U6U5 | 1 |
| Putative helicase MOV-10 (EC 3.6.4.13) (Moloney leukemia virus 10 protein) | Mov10 Gb110 | P23249 | 1 |
| Putative hydrolase RBBP9 (EC 3.-.-.-) (B5T-overexpressed gene protein) (Protein BOG) (Retinoblastoma-binding protein 9) (RBBP-9) | Rbbp9 Bog | O88851 | 1 |
| Putative hydroxypyruvate isomerase (EC 5.3.1.22) | Hyi | Q8R1F5 | 1 |
| Putative lipoyltransferase 2, mitochondrial (EC 2.3.1.181) (Lipoate-protein ligase B) (Lipoyl/octanoyl transferase) (Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase) | Lipt2 | Q9D009 | 1 |
| Putative mitochondrial import inner membrane translocase subunit Tim8 A-B | Timm8a2 Timm8ab | Q4FZG7 | 1 |
| Putative nuclease HARBI1 (EC 3.1.-.-) (Harbinger transposase-derived nuclease) | Harbi1 | Q8BR93 | 1 |
| Putative oxidoreductase GLYR1 (EC 1.-.-.-) (Glyoxylate reductase 1 homolog) (Nuclear protein NP60) | Glyr1 Np60 | Q922P9 | 1 |
| Putative phospholipase B-like 2 (EC 3.1.1.-) (66.3 kDa protein) (76 kDa protein) (p76) (LAMA-like protein 2) (Lamina ancestor homolog 2) (Phospholipase B domain-containing protein 2) [Cleaved into: Putative phospholipase B-like 2 28 kDa form; Putative phospholipase B-like 2 40 kDa form; Putative phospholipase B-like 2 15 kDa form] | Plbd2 | Q3TCN2 | 1 |
| Putative polypeptide N-acetylgalactosaminyltransferase-like protein 5 (EC 2.4.1.-) (Polypeptide GalNAc transferase 15) (GalNAc-T15) (pp-GaNTase 15) (Protein-UDP acetylgalactosaminyltransferase 15) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 15) | Galntl5 Galnt15 | Q9D4M9 | 1 |
| Putative protein PTGES3L (Prostaglandin E synthase 3-like) | Ptges3l | Q9D9A7 | 1 |
| Putative ribosomal RNA methyltransferase NOP2 | Nop2 | E9QN31 | 1 |
| Putative sodium-coupled neutral amino acid transporter 7 (Solute carrier family 38 member 7) | Slc38a7 Snat7 | Q8BWH0 | 1 |
| Putative transcription factor Ovo-like 1 (mOvo1) (mOvo1a) | Ovol1 | Q9WTJ2 | 1 |
| Putative transferase CAF17 homolog, mitochondrial (EC 2.1.-.-) (Iron-sulfur cluster assembly factor homolog) | Iba57 | Q8CAK1 | 1 |
| Putative tyrosine-protein phosphatase auxilin (EC 3.1.3.48) (DnaJ homolog subfamily C member 6) | Dnajc6 Kiaa0473 | Q80TZ3 | 1 |
| Putative uncharacterized protein | Csprs | Q8BYZ8 | 1 |
| Putative uncharacterized protein | Zbtb2 Gm1103 | Q3V1Q5 | 1 |
| Putative uncharacterized protein | Zfp595 | Q3UWJ2 | 1 |
| Putative uncharacterized protein | Zfp934 | Q8BSR1 | 1 |
| Putative uncharacterized protein | Ythdf2 | Q8BM70 | 1 |
| Putative uncharacterized protein | Ifitm7 EG665536 Gm7676 | Q8BVR2 | 1 |
| Putative uncharacterized protein | Skiv2l | Q3TW36 | 1 |
| Putative uncharacterized protein | Uvrag Uvrag1 | Q8BVI8 | 1 |
| Putative uncharacterized protein | Polr2j | Q3TYI2 | 1 |
| Putative uncharacterized protein | 1700065D16Rik | Q8BR99 | 1 |
| Putative uncharacterized protein | BC048644 | Q3V0I3 | 1 |
| Putative uncharacterized protein (Fragment) | Fbxw22 EG382156 | Q3TSG7 | 1 |
| Putative uncharacterized protein (Fragment) | Tsc2 | Q3UGI8 | 1 |
| Putative uncharacterized protein (Fragment) | Pld1 | Q3UWT7 | 1 |
| Putative uncharacterized protein (Fragment) | Matn2 | Q3TQ80 | 1 |
| Putative uncharacterized protein ZNRD1-AS1 homolog (T-complex testis-expressed protein 4) (ZNRD1 antisense RNA 1) (ZNRD1 antisense gene protein 1) | Znrd1-as Tctex4 Znrd1as | Q8R0E5 | 1 |
| Pyridoxal-dependent decarboxylase domain-containing protein 1 (EC 4.1.1.-) | Pdxdc1 | Q99K01 | 1 |
| Pyruvate carboxylase (EC 6.4.1.1) | Pcx | E9QPD7 | 1 |
| Pyruvate dehydrogenase E1 component subunit beta, mitochondrial (PDHE1-B) (EC 1.2.4.1) | Pdhb | Q9D051 | 1 |
| Queuine tRNA-ribosyltransferase (EC 2.4.2.29) (Guanine insertion enzyme) (tRNA-guanine transglycosylase) | Qtrt1 Tgt Tgut | Q9JMA2 | 1 |
| R3H and coiled-coil domain-containing protein 1-like (Growth inhibition and differentiation-related protein 88 homolog) | R3hcc1l D19Ertd386e Gidrp88 | Q8BJM3 | 1 |
| R3H domain-containing protein 2 | R3hdm2 Kiaa1002 | Q80TM6 | 1 |
| Rab GTPase-binding effector protein 2 (Rabaptin-5beta) | Rabep2 Rabpt5b | Q91WG2 | 1 |
| Rab-3A-interacting protein (Rab3A-interacting protein) (Rabin-3) (SSX2-interacting protein) | Rab3ip Rabin8 | Q68EF0 | 1 |
| Rab-like protein 5 | Rabl5 | Q9DAI2 | 1 |
| Rab-like protein 6 (GTP-binding protein Parf) (Rab-like protein 1) (RBEL1) | Rabl6 Parf | Q5U3K5 | 1 |
| Rab11 family-interacting protein 3 (FIP3-Rab11) (Rab11-FIP3) | Rab11fip3 Kiaa0665 | Q8CHD8 | 1 |
| Rab15 effector protein | Rep15 | Q9D7T1 | 1 |
| RAB23, member RAS oncogene family, isoform CRA_a (Ras-related protein Rab-23) | Rab23 mCG_10410 | Q9D4I9 | 1 |
| Rab3 GTPase-activating protein catalytic subunit (RAB3 GTPase-activating protein 130 kDa subunit) (Rab3-GAP p130) (Rab3-GAP) | Rab3gap1 Kiaa0066 Rab3gap | Q80UJ7 | 1 |
| Rabenosyn-5 (FYVE finger-containing Rab5 effector protein rabenosyn-5) (Zinc finger FYVE domain-containing protein 20) | Zfyve20 | Q80Y56 | 1 |
| Radixin (ESP10) | Rdx | P26043 | 1 |
| Ragulator complex protein LAMTOR2 (Endosomal adaptor protein p14) (Late endosomal/lysosomal Mp1-interacting protein) (Late endosomal/lysosomal adaptor and MAPK and MTOR activator 2) (Mitogen-activated protein-binding protein-interacting protein) (Roadblock domain-containing protein 3) | Lamtor2 Mapbpip Robld3 | Q9JHS3 | 1 |
| Ral GTPase-activating protein subunit alpha-1 (GAP-related-interacting partner to E12) (GRIPE) (GTPase-activating RapGAP domain-like 1) (Tuberin-like protein 1) (p240) | Ralgapa1 Garnl1 Kiaa0884 Tulip1 | Q6GYP7 | 1 |
| Ran guanine nucleotide release factor (RanGNRF) (Ran-binding protein MOG1) | Rangrf Mog1 Rangnrf | Q9JIB0 | 1 |
| Ran-binding protein 3 (RanBP3) | Ranbp3 | Q9CT10 | 1 |
| RanBP-type and C3HC4-type zinc finger-containing protein 1 (EC 6.3.2.-) (Heme-oxidized IRP2 ubiquitin ligase 1 homolog) (HOIL-1) (UbcM4-interacting protein 28) (Ubiquitin-conjugating enzyme 7-interacting protein 3) | Rbck1 Rbck Ubce7ip3 Uip28 | Q9WUB0 | 1 |
| Rap guanine nucleotide exchange factor 2 | Rapgef2 | E9QNQ4 | 1 |
| Rap guanine nucleotide exchange factor 4 (Exchange factor directly activated by cAMP 2) (Exchange protein directly activated by cAMP 2) (EPAC 2) (cAMP-dependent Rap1 guanine-nucleotide exchange factor) (cAMP-regulated guanine nucleotide exchange factor II) (cAMP-GEFII) | Rapgef4 Cgef2 Epac2 | Q9EQZ6 | 1 |
| Rapgef6 protein | Rapgef6 | B2RUJ6 | 1 |
| Ras and Rab interactor-like protein | Rinl | Q80UW3 | 1 |
| Ras association domain-containing protein 4 | Rassf4 | Q8CB96 | 1 |
| Ras association domain-containing protein 6 | Rassf6 | Q80UQ2 | 1 |
| Ras association domain-containing protein 9 (PAM COOH-terminal interactor protein 1) (P-CIP1) (Peptidylglycine alpha-amidating monooxygenase COOH-terminal interactor) | Rassf9 Pamci Pcip1 | Q8K342 | 1 |
| Ras GTPase-activating protein-binding protein 1 (G3BP-1) (EC 3.6.4.12) (EC 3.6.4.13) (ATP-dependent DNA helicase VIII) (GAP SH3 domain-binding protein 1) (HDH-VIII) | G3bp1 G3bp | P97855 | 1 |
| Ras-like protein family member 11A | Rasl11a | Q6IMB1 | 1 |
| Ras-related C3 botulinum toxin substrate 2 (Protein EN-7) (p21-Rac2) | Rac2 | Q05144 | 1 |
| Ras-related protein Rab-12 (Rab-13) | Rab12 | P35283 | 1 |
| Ras-related protein Rab-19 | Rab19 | P35294 | 1 |
| Ras-related protein Rab-21 (Rab-12) | Rab21 | P35282 | 1 |
| Ras-related protein Rab-27B | Rab27b | Q99P58 | 1 |
| Ras-related protein Rab-2A | Rab2a Rab2 | P53994 | 1 |
| Ras-related protein Rab-2B | Rab2b | P59279 | 1 |
| Ras-related protein Rab-30 | Rab30 Rsb30 | Q923S9 | 1 |
| Ras-related protein Rab-40B (SOCS box-containing protein RAR) | Rab40b | Q8VHP8 | 1 |
| Ras-related protein Rab-40C (SOCS box-containing protein RAR3) | Rab40c | Q8VHQ4 | 1 |
| Ras-related protein Rab-4A | Rab4a Rab4 | P56371 | 1 |
| Ras-related protein Rab-5B | Rab5b | P61021 | 1 |
| Ras-related protein Rab-5C | Rab5c | P35278 | 1 |
| Ras-related protein Rab-7L1 | Rab7l1 | E9QLQ7 | 1 |