| 26S protease regulatory subunit 6A (Fragment) | PSMC3 | E9PKD5 | 3 |
| 26S proteasome non-ATPase regulatory subunit 1 (Fragment) | PSMD1 | H7C378 | 3 |
| 26S proteasome non-ATPase regulatory subunit 10 | PSMD10 | B1AJY5 | 3 |
| 26S proteasome non-ATPase regulatory subunit 11 (26S proteasome regulatory subunit RPN6) (26S proteasome regulatory subunit S9) (26S proteasome regulatory subunit p44.5) | PSMD11 | Q53FT5 | 3 |
| 26S proteasome non-ATPase regulatory subunit 13 | PSMD13 | E9PPD2 | 3 |
| 26S proteasome non-ATPase regulatory subunit 13 | PSMD13 | E9PQG3 | 3 |
| 26S proteasome non-ATPase regulatory subunit 13 (Fragment) | PSMD13 | H0YD73 | 3 |
| 26S proteasome non-ATPase regulatory subunit 2 (Fragment) | PSMD2 | C9JPC0 | 3 |
| 26S proteasome non-ATPase regulatory subunit 4 (Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 4, isoform CRA_b) | PSMD4 hCG_1741224 | Q5VWC4 | 3 |
| 26S proteasome non-ATPase regulatory subunit 7 | PSMD7 | H3BQV2 | 3 |
| 28S ribosomal protein S10, mitochondrial (MRP-S10) (S10mt) (Mitochondrial small ribosomal subunit protein uS10m) | MRPS10 MSTP040 | P82664 | 3 |
| 28S ribosomal protein S22, mitochondrial (Mitochondrial ribosomal protein S22, isoform CRA_e) | MRPS22 hCG_17223 | G5E9W7 | 3 |
| 28S ribosomal protein S7, mitochondrial | MRPS7 | J3QKW2 | 3 |
| 3'-phosphoadenosine 5'-phosphosulfate synthase 2, isoform CRA_b (cDNA, FLJ92929, highly similar to Homo sapiens 3'-phosphoadenosine 5'-phosphosulfate synthase 2 (PAPSS2), mRNA) | PAPSS2 hCG_23331 | Q5TB52 | 3 |
| 3-hydroxyacyl-CoA dehydrogenase type-2 (EC 1.1.1.35) (17-beta-hydroxysteroid dehydrogenase 10) (17-beta-HSD 10) (EC 1.1.1.51) (3-hydroxy-2-methylbutyryl-CoA dehydrogenase) (EC 1.1.1.178) (3-hydroxyacyl-CoA dehydrogenase type II) (Endoplasmic reticulum-associated amyloid beta-peptide-binding protein) (Mitochondrial ribonuclease P protein 2) (Mitochondrial RNase P protein 2) (Short chain dehydrogenase/reductase family 5C member 1) (Short-chain type dehydrogenase/reductase XH98G2) (Type II HADH) | HSD17B10 ERAB HADH2 MRPP2 SCHAD SDR5C1 XH98G2 | Q6IBS9 | 3 |
| 3-hydroxyacyl-CoA dehydrogenase type-2 (Hydroxysteroid (17-beta) dehydrogenase 10) | HSD17B10 RP3-339A18.2-004 | Q5H928 | 3 |
| 3-ketoacyl-CoA thiolase, peroxisomal | ACAA1 | C9JDE9 | 3 |
| 3-mercaptopyruvate sulfurtransferase | MPST | B1AH49 | 3 |
| 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase) | OXSM | Q9NWU1 | 3 |
| 39S ribosomal protein L24, mitochondrial (L24mt) (MRP-L24) (Mitochondrial large ribosomal subunit protein uL24m) | MRPL24 | Q96A35 | 3 |
| 39S ribosomal protein L34, mitochondrial (L34mt) (MRP-L34) (Mitochondrial large ribosomal subunit protein bL34m) | MRPL34 | Q9BQ48 | 3 |
| 39S ribosomal protein L52, mitochondrial (L52mt) (MRP-L52) (Mitochondrial large ribosomal subunit protein mL52) | MRPL52 | Q86TS9 | 3 |
| 39S ribosomal protein S18a, mitochondrial (MRP-S18-a) (Mrps18a) (S18mt-a) (39S ribosomal protein S18-3, mitochondrial) (MRP-S18-3) (Mitochondrial large ribosomal subunit protein bS18a) (Mitochondrial large ribosomal subunit protein mL66) | MRPS18A | Q9NVS2 | 3 |
| 4-aminobutyrate aminotransferase, mitochondrial | ABAT | H3BRN4 | 3 |
| 4-hydroxy-2-oxoglutarate aldolase, mitochondrial (EC 4.1.3.16) (Dihydrodipicolinate synthase-like) (DHDPS-like protein) (Probable 2-keto-4-hydroxyglutarate aldolase) (Probable KHG-aldolase) (Protein 569272) | HOGA1 C10orf65 DHDPSL | Q86XE5 | 3 |
| 40S ribosomal protein S11 | RPS11 | M0QZC5 | 3 |
| 40S ribosomal protein S11 | RPS11 | M0R1H5 | 3 |
| 40S ribosomal protein S11 | RPS11 | M0R1H6 | 3 |
| 40S ribosomal protein S15a | RPS15A | I3L246 | 3 |
| 40S ribosomal protein S17 | RPS17 | H0YN88 | 3 |
| 40S ribosomal protein S19 (Fragment) | RPS19 | M0R2L9 | 3 |
| 40S ribosomal protein S2 | RPS2 | E9PQD7 | 3 |
| 40S ribosomal protein S20 | RPS20 | E5RIP1 | 3 |
| 40S ribosomal protein S24 | RPS24 | E7ETK0 | 3 |
| 40S ribosomal protein S27 | RPS27L | C9JLI6 | 3 |
| 40S ribosomal protein S3 (Fragment) | RPS3 | H0YEU2 | 3 |
| 40S ribosomal protein S3a (Fragment) | RPS3A | D6RG13 | 3 |
| 40S ribosomal protein S6 | RPS6 | A2A3R7 | 3 |
| 40S ribosomal protein S7 (Small ribosomal subunit protein eS7) | RPS7 | Q57Z92 | 3 |
| 40S ribosomal protein SA (37 kDa laminin receptor precursor) (37LRP) (37/67 kDa laminin receptor) (LRP/LR) (67 kDa laminin receptor) (67LR) (Laminin receptor 1) (LamR) (Laminin-binding protein precursor p40) (LBP/p40) | RPSA | Q96RS2 | 3 |
| 4a-carbinolamine dehydratase (Fragment) | 0 | Q6LEE0 | 3 |
| 5'-nucleotidase domain-containing protein 3 (EC 3.1.3.-) (GRP94-neighboring nucleotidase) | NT5DC3 GNN TU12B1-TY | Q86UY8 | 3 |
| 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) | PGD PGDH | B4DQJ8 | 3 |
| 6-pyruvoyl tetrahydrobiopterin synthase (PTP synthase) (PTPS) (EC 4.2.3.12) | PTS | Q03393 | 3 |
| 60 kDa lysophospholipase (EC 3.1.1.5) [Includes: L-asparaginase (EC 3.5.1.1) (L-asparagine amidohydrolase); Platelet-activating factor acetylhydrolase (PAF acetylhydrolase) (EC 3.1.1.47)] | ASPG C14orf76 | Q86U10 | 3 |
| 60 kDa SS-A/Ro ribonucleoprotein (60 kDa Ro protein) (60 kDa ribonucleoprotein Ro) (RoRNP) (Ro 60 kDa autoantigen) (Sjoegren syndrome antigen A2) (Sjoegren syndrome type A antigen) (SS-A) (TROVE domain family member 2) | TROVE2 RO60 SSA2 | Q86WL3 | 3 |
| 60S acidic ribosomal protein P0 | RPLP0 | F8VWS0 | 3 |
| 60S ribosomal protein L10 (Fragment) | RPL10 | X1WI28 | 3 |
| 60S ribosomal protein L18 (Fragment) | RPL18 | F8VUA6 | 3 |
| 60S ribosomal protein L23 | RPL23 | B9ZVP7 | 3 |
| 60S ribosomal protein L23 | RPL23 | J3KT29 | 3 |
| 60S ribosomal protein L27 (Fragment) | RPL27 | K7ELC7 | 3 |
| 60S ribosomal protein L28 (Large ribosomal subunit protein eL28) | RPL28 | E9PB24 | 3 |
| 60S ribosomal protein L35 | RPL35 | F2Z388 | 3 |
| 60S ribosomal protein L39 (Large ribosomal subunit protein eL39) | RPL39 | P62891 | 3 |
| 8-oxo-dGDP phosphatase NUDT18 (EC 3.6.1.58) (2-hydroxy-dADP phosphatase) (7,8-dihydro-8-oxoguanine phosphatase) (MutT homolog 3) (Nucleoside diphosphate-linked moiety X motif 18) (Nudix motif 18) | NUDT18 MTH3 | Q6ZVK8 | 3 |
| A-kinase anchor protein 2 (Fragment) | AKAP2 | C9JVY5 | 3 |
| A30 (Fragment) | 0 | A2MYE1 | 3 |
| ABC transporter MOAT-B isoform (Fragment) | MOAT-B | O75555 | 3 |
| ABI gene family, member 3 (NESH) binding protein, isoform CRA_d (Putative uncharacterized protein DKFZp667H216) (Target of Nesh-SH3) | DKFZp667H216 ABI3BP hCG_2023009 | Q5JPC9 | 3 |
| Abl interactor 2 | ABI2 | E9PEZ7 | 3 |
| Acetyl-Coenzyme A carboxylase alpha (HCG30204, isoform CRA_b) | ACACA hCG_30204 | B2ZZ90 | 3 |
| Acid phosphatase type 7 (EC 3.1.3.2) (Purple acid phosphatase long form) | ACP7 PAPL PAPL1 | Q6ZNF0 | 3 |
| Acid-sensing ion channel 1 (ASIC1) (Amiloride-sensitive cation channel 2, neuronal) (Brain sodium channel 2) (BNaC2) | ASIC1 ACCN2 BNAC2 | P78348 | 3 |
| ACTG1 protein (Fragment) | ACTG1 | Q6PJ43 | 3 |
| Actin, aortic smooth muscle (Fragment) | ACTA2 | F6UVQ4 | 3 |
| Actin, cytoplasmic 2 | ACTG1 | J3KT65 | 3 |
| Actin, gamma-enteric smooth muscle | ACTG2 | F8WB63 | 3 |
| Actin, gamma-enteric smooth muscle (Alpha-actin-3) (Gamma-2-actin) (Smooth muscle gamma-actin) | ACTG2 ACTA3 ACTL3 ACTSG | E9PG30 | 3 |
| Actin-like protein (Fragment) | ACT | Q562S5 | 3 |
| Actin-related protein 2/3 complex subunit 4 | ARPC4 | F8WDD7 | 3 |
| Actin-related protein 2/3 complex subunit 4 (Arp2/3 complex 20 kDa subunit) (p20-ARC) | ARPC4 ARC20 | C9JWM7 | 3 |
| Actin-related protein 5 (hARP5) (Sarcoma antigen NY-SAR-16) | ACTR5 ARP5 | Q9H9F9 | 3 |
| Activator of basal transcription 1 (hABT1) (Basal transcriptional activator) | ABT1 | Q9ULW3 | 3 |
| Activin receptor type-2B (EC 2.7.11.30) (Activin receptor type IIB) (ACTR-IIB) | ACVR2B | Q13705 | 3 |
| ACTR2 protein | ACTR2 | Q8IY98 | 3 |
| Acyl-CoA dehydrogenase family member 10 (ACAD-10) (EC 1.3.99.-) | ACAD10 | Q6JQN1 | 3 |
| Acyl-CoA synthetase family member 3, mitochondrial (EC 6.2.1.-) | ACSF3 PSEC0197 | Q4G176 | 3 |
| Acyl-coenzyme A oxidase-like protein (Acyl-CoA oxidase-like protein) (EC 1.3.3.-) | ACOXL | Q9NUZ1 | 3 |
| Acyl-protein thioesterase 1 | LYPLA1 | A0A087X1K9 | 3 |
| Acylglycerol kinase, mitochondrial | AGK | E9PC15 | 3 |
| ADAM DEC1 (EC 3.4.24.-) (A disintegrin and metalloproteinase domain-like protein decysin-1) (ADAM-like protein decysin-1) | ADAMDEC1 | O15204 | 3 |
| ADAM metallopeptidase domain 17 (ADAM metallopeptidase domain 17 (Tumor necrosis factor, alpha, converting enzyme), isoform CRA_b) (ADAM metallopeptidase domain 18) | ADAM17 ADAM18 hCG_23065 | B2RNB2 | 3 |
| ADAMTS-like protein 1 (ADAMTSL-1) (Punctin-1) | ADAMTSL1 ADAMTSR1 C9orf94 UNQ528/PRO1071 | Q8N6G6 | 3 |
| Adaptor-related protein complex 1, gamma 1 subunit | AP1G1 | Q8IY97 | 3 |
| Adenosylhomocysteinase (EC 3.3.1.1) (Fragment) | AHCYL2 | H0Y8B3 | 3 |
| Adenylate cyclase type 5 (EC 4.6.1.1) (ATP pyrophosphate-lyase 5) (Adenylate cyclase type V) (Adenylyl cyclase 5) (AC5) | ADCY5 | O95622 | 3 |
| Adenylate kinase 2, mitochondrial | AK2 | F8VY04 | 3 |
| Adenylyl cyclase-associated protein | 0 | B4DNA3 | 3 |
| Adhesion G protein-coupled receptor A3 (G-protein coupled receptor 125) | ADGRA3 GPR125 UNQ556/PRO1113 | Q8IWK6 | 3 |
| Adhesion G protein-coupled receptor L2 (Fragment) | ADGRL2 | H0Y5C0 | 3 |
| ADNP homeobox protein 2 (Zinc finger protein 508) | ADNP2 KIAA0863 ZNF508 | Q6IQ32 | 3 |
| ADP-ribosylation factor 4 | ARF4 | C9JAK5 | 3 |
| ADP-ribosylation factor 6 | ARF6 | Q6FGZ2 | 3 |
| ADP-ribosylation factor interacting protein 1 (Arfaptin 1), isoform CRA_b (ARFIP1 protein) (cDNA FLJ53696, highly similar to Arfaptin-1) | ARFIP1 hCG_26981 | B4E273 | 3 |
| ADP-ribosylation factor-like protein 13B (ADP-ribosylation factor-like protein 2-like 1) (ARL2-like protein 1) | ARL13B ARL2L1 | G3V1S8 | 3 |
| ADP-ribosylation factor-like protein 5A | ARL5A ARFLP5 ARL5 | Q9Y689 | 3 |
| ADP-sugar pyrophosphatase | NUDT5 | A6NFX8 | 3 |
| ADP/ATP translocase 2 (ADP,ATP carrier protein 2) (ADP,ATP carrier protein, fibroblast isoform) (Adenine nucleotide translocator 2) (ANT 2) (Solute carrier family 25 member 5) [Cleaved into: ADP/ATP translocase 2, N-terminally processed] | SLC25A5 ANT2 | B2RCV1 | 3 |
| Adrenodoxin, mitochondrial (Adrenal ferredoxin) (Ferredoxin-1) (Hepatoredoxin) | FDX1 ADX | P10109 | 3 |