| WD repeat-containing protein 11 (Fragment) | WDR11 | S4R3Z0 | 1 |
| WD repeat-containing protein 13 | WDR13 | Q06DW8 | 1 |
| WD repeat-containing protein 17 | WDR17 | Q8IZU2 | 1 |
| WD repeat-containing protein 20 | WDR20 | H0YKE8 | 1 |
| WD repeat-containing protein 34 | WDR34 | Q96EX3 | 1 |
| WD repeat-containing protein 37 | WDR37 | E7EQ49 | 1 |
| WD repeat-containing protein 43 (Fragment) | WDR43 | C9JH61 | 1 |
| WD repeat-containing protein 47 (Fragment) | WDR47 | E9PNF6 | 1 |
| WD repeat-containing protein 48 | WDR48 | F8W6P2 | 1 |
| WD repeat-containing protein 48 | WDR48 | F8W9K4 | 1 |
| WD repeat-containing protein 6 | WDR6 | E9PDU5 | 1 |
| WD repeat-containing protein 61 (Fragment) | WDR61 | H3BQA8 | 1 |
| WD repeat-containing protein 63 (Testis development protein NYD-SP29) | WDR63 | Q8IWG1 | 1 |
| WD repeat-containing protein 7 (Fragment) | WDR7 | K7EPY9 | 1 |
| WD repeat-containing protein 73 (Fragment) | WDR73 | H0YLH0 | 1 |
| WD repeat-containing protein 93 | WDR93 | Q6P2C0 | 1 |
| Wee1-like protein kinase 2 (EC 2.7.10.2) (Wee1-like protein kinase 1B) (Wee1B kinase) | WEE2 WEE1B | P0C1S8 | 1 |
| Wilms tumor protein (WT33) | WT1 | P19544 | 1 |
| Wings apart-like homolog variant 4 (Fragment) | WAPL | B3Y1W5 | 1 |
| Wiskott-Aldrich syndrome protein family member 1 (Fragment) | WASF1 | Q5SZK4 | 1 |
| Wiskott-Aldrich syndrome protein family member 1 (Fragment) | WASF1 | Q5SZK5 | 1 |
| WW domain-binding protein 2 (cDNA FLJ57063, highly similar to WW domain-binding protein 2) | WBP2 | B4DFG2 | 1 |
| WW domain-binding protein 2 (cDNA FLJ59459, highly similar to WW domain-binding protein 2) | WBP2 | B4DDJ2 | 1 |
| WW domain-binding protein 2 (Fragment) | WBP2 | K7EIN1 | 1 |
| WW domain-containing transcription regulator protein 1 (Fragment) | WWTR1 | C9JQS8 | 1 |
| WW domain-containing transcription regulator protein 1 (Transcriptional coactivator with PDZ-binding motif) | WWTR1 TAZ | Q9GZV5 | 1 |
| X-linked retinitis pigmentosa GTPase regulator-interacting protein 1 (Fragment) | RPGRIP1 | H0YJ99 | 1 |
| Xaa-Pro aminopeptidase 1 (Fragment) | XPNPEP1 | Q5T6H3 | 1 |
| Xaa-Pro aminopeptidase 1 (Fragment) | XPNPEP1 | Q5T6H2 | 1 |
| Xaa-Pro aminopeptidase 2 | XPNPEP2 | Q5JZ40 | 1 |
| XIAP-associated factor 1 (Fragment) | XAF1 | I3L3B3 | 1 |
| Xin actin-binding repeat-containing protein 1 (Cardiomyopathy-associated protein 1) | XIRP1 CMYA1 XIN | Q702N8 | 1 |
| XK-related protein 3 (X Kell blood group-related 3) (XTES) | XKR3 XRG3 | Q5GH77 | 1 |
| XK-related protein 5 | XKR5 XRG5 UNQ2754/PRO6493 | Q6UX68 | 1 |
| XK-related protein 6 | XKR6 C8orf21 C8orf5 C8orf7 XRG6 | Q5GH73 | 1 |
| XK-related protein 8 (hXkr8) [Cleaved into: XK-related protein 8, processed form] | XKR8 XRG8 | Q9H6D3 | 1 |
| YBX1 protein (Fragment) | YBX1 | Q6PKI6 | 1 |
| YLP motif-containing protein 1 (Fragment) | YLPM1 | H0YIQ2 | 1 |
| YY1-associated protein 1 (Hepatocellular carcinoma susceptibility protein) (Hepatocellular carcinoma-associated protein 2) | YY1AP1 HCCA2 YY1AP | Q9H869 | 1 |
| ZA protein | ZA | Q9UM89 | 1 |
| Zeta-sarcoglycan (Zeta-SG) (ZSG1) | SGCZ | Q96LD1 | 1 |
| Zinc finger and BTB domain containing 7C (Zinc finger and BTB domain-containing protein 7C) (Fragment) | ZBTB7C | B2RG76 | 1 |
| Zinc finger and BTB domain-containing protein 16 (Promyelocytic leukemia zinc finger protein) (Zinc finger protein 145) (Zinc finger protein PLZF) | ZBTB16 PLZF ZNF145 | Q05516 | 1 |
| Zinc finger and BTB domain-containing protein 17 (Myc-interacting zinc finger protein 1) (Miz-1) (Zinc finger protein 151) (Zinc finger protein 60) | ZBTB17 MIZ1 ZNF151 ZNF60 | Q13105 | 1 |
| Zinc finger and BTB domain-containing protein 18 (58 kDa repressor protein) (Transcriptional repressor RP58) (Translin-associated zinc finger protein 1) (TAZ-1) (Zinc finger protein 238) (Zinc finger protein C2H2-171) | ZBTB18 RP58 TAZ1 ZNF238 | Q99592 | 1 |
| Zinc finger and BTB domain-containing protein 2 | ZBTB2 KIAA1483 ZNF437 | Q8N680 | 1 |
| Zinc finger and BTB domain-containing protein 20 (Dendritic-derived BTB/POZ zinc finger protein) (Zinc finger protein 288) | ZBTB20 DPZF ZNF288 | Q9HC78 | 1 |
| Zinc finger and BTB domain-containing protein 25 | ZBTB25 | G3V2K3 | 1 |
| Zinc finger and BTB domain-containing protein 37 | ZBTB37 | Q5TC79 | 1 |
| Zinc finger and BTB domain-containing protein 45 (Zinc finger protein 499) | ZBTB45 ZNF499 | Q96K62 | 1 |
| Zinc finger and BTB domain-containing protein 49 | ZBTB49 | D6RB16 | 1 |
| Zinc finger and BTB domain-containing protein 49 (Zinc finger protein 509) | ZBTB49 ZNF509 | Q6ZSB9 | 1 |
| Zinc finger and BTB domain-containing protein 5 | ZBTB5 KIAA0354 | O15062 | 1 |
| Zinc finger and BTB domain-containing protein 7A (Factor binding IST protein 1) (FBI-1) (Factor that binds to inducer of short transcripts protein 1) (HIV-1 1st-binding protein 1) (Leukemia/lymphoma-related factor) (POZ and Krueppel erythroid myeloid ontogenic factor) (POK erythroid myeloid ontogenic factor) (Pokemon) (TTF-I-interacting peptide 21) (TIP21) (Zinc finger protein 857A) | ZBTB7A FBI1 LRF ZBTB7 ZNF857A | O95365 | 1 |
| Zinc finger and SCAN domain-containing protein 16 (Zinc finger protein 392) (Zinc finger protein 435) | ZSCAN16 ZNF392 ZNF435 | Q9H4T2 | 1 |
| Zinc finger and SCAN domain-containing protein 18 | ZSCAN18 | M0R111 | 1 |
| Zinc finger and SCAN domain-containing protein 18 (Zinc finger protein 447) | ZSCAN18 ZNF447 | Q8TBC5 | 1 |
| Zinc finger and SCAN domain-containing protein 5A (Zinc finger protein 495) | ZSCAN5A ZNF495 ZSCAN5 | Q9BUG6 | 1 |
| Zinc finger and SCAN domain-containing protein 5B | ZSCAN5B | A6NJL1 | 1 |
| Zinc finger BED domain-containing protein 3 (Axin-interacting protein) | ZBED3 | Q96IU2 | 1 |
| Zinc finger BED domain-containing protein 3 (Fragment) | ZBED3 | D6RIC4 | 1 |
| Zinc finger BED domain-containing protein 4 | ZBED4 KIAA0637 | O75132 | 1 |
| Zinc finger BED domain-containing protein 6 | ZBED6 | P86452 | 1 |
| Zinc finger C2HC domain-containing protein 1A (Fragment) | ZC2HC1A | H0YAP0 | 1 |
| Zinc finger C2HC domain-containing protein 1C | ZC2HC1C C14orf140 FAM164C | Q53FD0 | 1 |
| Zinc finger CCCH domain-containing protein 14 | ZC3H14 | G3V256 | 1 |
| Zinc finger CCCH domain-containing protein 14 (Fragment) | ZC3H14 | H0YJA2 | 1 |
| Zinc finger CCCH domain-containing protein 15 (DRG family-regulatory protein 1) (Likely ortholog of mouse immediate early response erythropoietin 4) | ZC3H15 DFRP1 LEREPO4 HSPC303 HT010 MSTP012 PP730 | B4DMW2 | 1 |
| Zinc finger CCCH domain-containing protein 18 (Fragment) | ZC3H18 | H3BPD0 | 1 |
| Zinc finger CCCH domain-containing protein 3 (Smad-interacting CPSF-like factor) | ZC3H3 KIAA0150 SMICL ZC3HDC3 | Q8IXZ2 | 1 |
| Zinc finger CCCH domain-containing protein 7A (Fragment) | ZC3H7A | I3L323 | 1 |
| Zinc finger CCHC domain-containing protein 10 | ZCCHC10 | Q8TBK6 | 1 |
| Zinc finger CCHC domain-containing protein 12 (Smad-interacting zinc finger protein 1) | ZCCHC12 SIZN1 | Q6PEW1 | 1 |
| Zinc finger CCHC domain-containing protein 2 (Fragment) | ZCCHC2 | K7ERQ9 | 1 |
| Zinc finger CCHC domain-containing protein 4 | ZCCHC4 | Q9H5U6 | 1 |
| Zinc finger CCHC-type and RNA-binding motif-containing protein 1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein) (U11/U12 snRNP 31 kDa protein) (U11/U12-31K) | ZCRB1 | Q8TBF4 | 1 |
| Zinc finger CW-type PWWP domain protein 1 | ZCWPW1 | Q9H0M4 | 1 |
| Zinc finger FYVE domain-containing protein 9 (Mothers against decapentaplegic homolog-interacting protein) (Madh-interacting protein) (Novel serine protease) (NSP) (Receptor activation anchor) (hSARA) (Smad anchor for receptor activation) | ZFYVE9 MADHIP SARA SMADIP | O95405 | 1 |
| Zinc finger HIT domain-containing protein 1 (Cyclin-G1-binding protein 1) (Zinc finger protein subfamily 4A member 1) (p18 Hamlet) | ZNHIT1 CGBP1 ZNFN4A1 | O43257 | 1 |
| Zinc finger imprinted 2 (Zinc finger protein 656) | ZIM2 ZNF656 | Q9NZV7 | 1 |
| Zinc finger protein 107 (Zinc finger protein 588) (Zinc finger protein ZFD25) | ZNF107 ZFD25 ZNF588 | Q9UII5 | 1 |
| Zinc finger protein 121 (Zinc finger protein 20) | ZNF121 ZNF20 | P58317 | 1 |
| Zinc finger protein 133 (Zinc finger protein 150) | ZNF133 ZNF150 | P52736 | 1 |
| Zinc finger protein 134 | ZNF134 | P52741 | 1 |
| Zinc finger protein 136 | ZNF136 | P52737 | 1 |
| Zinc finger protein 140 | ZNF140 | P52738 | 1 |
| Zinc finger protein 157 (Zinc finger protein HZF22) | ZNF157 | P51786 | 1 |
| Zinc finger protein 169 | ZNF169 | Q5SR55 | 1 |
| Zinc finger protein 174 (AW-1) (Zinc finger and SCAN domain-containing protein 8) | ZNF174 ZSCAN8 | Q15697 | 1 |
| Zinc finger protein 177 | ZNF177 | Q13360 | 1 |
| Zinc finger protein 180 | ZNF180 | K7EMI5 | 1 |
| Zinc finger protein 182 (Zinc finger protein 21) (Zinc finger protein KOX14) | ZNF182 KOX14 ZNF21 | P17025 | 1 |
| Zinc finger protein 184 | ZNF184 | Q99676 | 1 |
| Zinc finger protein 185 (LIM domain protein ZNF185) (P1-A) | ZNF185 | B8K2M1 | 1 |
| Zinc finger protein 195 | ZNF195 ZNFP104 | O14628 | 1 |
| Zinc finger protein 2 (Zinc finger protein 2.2) (Zinc finger protein 661) | ZNF2 ZNF661 | Q9BSG1 | 1 |
| Zinc finger protein 213 (Putative transcription factor CR53) (Zinc finger protein with KRAB and SCAN domains 21) | ZNF213 ZKSCAN21 | O14771 | 1 |
| Zinc finger protein 219 | ZNF219 | Q9P2Y4 | 1 |
| Zinc finger protein 219 (Fragment) | ZNF219 | G3V452 | 1 |
| Zinc finger protein 221 | ZNF221 | Q9UK13 | 1 |