| D-beta-hydroxybutyrate dehydrogenase, mitochondrial (EC 1.1.1.30) (3-hydroxybutyrate dehydrogenase) (BDH) | Bdh1 Bdh | Q80XN0 | 4 |
| DBF4-type zinc finger-containing protein 2 homolog | Zdbf2 | Q5SS00 | 4 |
| DCN1-like protein 3 (DCUN1 domain-containing protein 3) (Defective in cullin neddylation protein 1-like protein 3) | Dcun1d3 | Q8K0V2 | 4 |
| DDB1- and CUL4-associated factor 7 (WD repeat-containing protein 68) (WD repeat-containing protein An11 homolog) | Dcaf7 Han11 Wdr68 | P61963 | 4 |
| Dedicator of cytokinesis protein 10 | Dock10 | E9QM99 | 4 |
| Dedicator of cytokinesis protein 6 | Dock6 | E9QPN7 | 4 |
| Dedicator of cytokinesis protein 7 | Dock7 | A2A9M5 | 4 |
| Dedicator of cytokinesis protein 9 | Dock9 | F8VPN7 | 4 |
| Dehydrogenase/reductase SDR family member 4 (EC 1.1.1.184) (NADPH-dependent carbonyl reductase/NADP-retinol dehydrogenase) (CR) (PHCR) (NADPH-dependent retinol dehydrogenase/reductase) (NDRD) (mouNRDR) (Peroxisomal short-chain alcohol dehydrogenase) (PSCD) | Dhrs4 D14Ucla2 | Q99LB2 | 4 |
| Delta(24)-sterol reductase (EC 1.3.1.72) (24-dehydrocholesterol reductase) (3-beta-hydroxysterol delta-24-reductase) | Dhcr24 Kiaa0018 | Q8VCH6 | 4 |
| Delta-sarcoglycan (Delta-SG) (35 kDa dystrophin-associated glycoprotein) (35DAG) | Sgcd | P82347 | 4 |
| Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 | Samhd1 | E9Q0K6 | 4 |
| Deoxyribonuclease-2-beta (EC 3.1.22.1) (DNase II-like acid DNase) (DNase2-like acid DNase) (Deoxyribonuclease II beta) (DNase II beta) (Endonuclease DLAD) | Dnase2b Dlad | Q9QY48 | 4 |
| Dephospho-CoA kinase domain-containing protein | Dcakd | Q8BHC4 | 4 |
| Dihydropteridine reductase | Qdpr | D3YWR7 | 4 |
| Dihydropyrimidinase-related protein 3 (Putative uncharacterized protein) | Dpysl3 | Q3TT92 | 4 |
| Dipeptidase 1 (EC 3.4.13.19) (Membrane-bound dipeptidase 1) (MBD-1) (Microsomal dipeptidase) (Renal dipeptidase) | Dpep1 Mbd1 Rdp | P31428 | 4 |
| Dipeptidyl peptidase 9 (DP9) (EC 3.4.14.5) (Dipeptidyl peptidase IX) (DPP IX) (Dipeptidyl peptidase-like protein 9) (DPLP9) | Dpp9 | Q8BVG4 | 4 |
| Disco-interacting protein 2 homolog A | Dip2a | F8WI56 | 4 |
| Discoidin, CUB and LCCL domain-containing protein 2 (Endothelial and smooth muscle cell-derived neuropilin-like protein) | Dcbld2 Esdn | Q91ZV3 | 4 |
| Disintegrin and metalloproteinase domain-containing protein 17 | Adam17 | E9PXU2 | 4 |
| DNA (cytosine-5)-methyltransferase 3A (Dnmt3a) (EC 2.1.1.37) (DNA methyltransferase MmuIIIA) (DNA MTase MmuIIIA) (M.MmuIIIA) | Dnmt3a | O88508 | 4 |
| DNA mismatch repair protein Msh6 (G/T mismatch-binding protein) (GTBP) (GTMBP) (MutS protein homolog 6) (MutS-alpha 160 kDa subunit) (p160) | Msh6 Gtmbp | P54276 | 4 |
| DNA primase large subunit (EC 2.7.7.-) (DNA primase 58 kDa subunit) (p58) | Prim2 | P33610 | 4 |
| DNA primase small subunit (EC 2.7.7.-) (DNA primase 49 kDa subunit) (p49) | Prim1 | P20664 | 4 |
| DNA repair protein RAD50 (RAD50 homolog (S. cerevisiae)) | Rad50 mCG_119249 | Q5SV02 | 4 |
| DNA repair protein XRCC1 (X-ray repair cross-complementing protein 1) | Xrcc1 Xrcc-1 | Q60596 | 4 |
| DNA segment, Chr 15, Wayne State University 169, expressed, isoform CRA_a (Rho GTPase-activating protein 39) | Arhgap39 D15Wsu169e mCG_134448 | G3X932 | 4 |
| DNA-dependent protein kinase catalytic subunit (DNA-PK catalytic subunit) (DNA-PKcs) (EC 2.7.11.1) (p460) | Prkdc Xrcc7 | P97313 | 4 |
| DNA-directed RNA polymerase III subunit RPC2 (RNA polymerase III subunit C2) (EC 2.7.7.6) (C128) (DNA-directed RNA polymerase III 127.6 kDa polypeptide) (DNA-directed RNA polymerase III subunit B) | Polr3b | P59470 | 4 |
| DnaJ homolog subfamily B member 2 (DnaJ homolog subfamily B member 10) (mDj8) | Dnajb2 Dnajb10 | Q9QYI5 | 4 |
| DnaJ homolog subfamily C member 2 (Mouse Id associate 1) (MIDA1) (Zuotin-related factor 1) [Cleaved into: DnaJ homolog subfamily C member 2, N-terminally processed] | Dnajc2 Mida1 Zrf1 | P54103 | 4 |
| DnaJ homolog subfamily C member 8 | Dnajc8 | Q6NZB0 | 4 |
| DnaJ homolog subfamily C member 9 | Dnajc9 | Q91WN1 | 4 |
| Docking protein 1 (Downstream of tyrosine kinase 1) (p62(dok)) | Dok1 Dok | P97465 | 4 |
| Dolichol-phosphate mannosyltransferase subunit 1 (EC 2.4.1.83) (Dolichol-phosphate mannose synthase subunit 1) (DPM synthase subunit 1) (Dolichyl-phosphate beta-D-mannosyltransferase subunit 1) (Mannose-P-dolichol synthase subunit 1) (MPD synthase) | Dpm1 | O70152 | 4 |
| Drebrin (Developmentally-regulated brain protein) | Dbn1 Drba | Q9QXS6 | 4 |
| Dynactin subunit 3 | Dctn3 | E9Q919 | 4 |
| Dynamin-1 (EC 3.6.5.5) | Dnm1 Dnm Kiaa4093 | P39053 | 4 |
| Dynamin-2 (Putative uncharacterized protein) | Dnm2 | Q3TCR7 | 4 |
| Dynein heavy chain 5, axonemal (Axonemal beta dynein heavy chain 5) (mDNAH5) (Ciliary dynein heavy chain 5) | Dnah5 Dnahc5 | Q8VHE6 | 4 |
| Dynein light chain roadblock | Dynlrb1 | A2AVR9 | 4 |
| Dystrobrevin | Dtnb | G3UY34 | 4 |
| E3 ubiquitin-protein ligase listerin (EC 2.3.2.27) (RING finger protein 160) (RING-type E3 ubiquitin transferase listerin) (Zinc finger protein 294) (Zfp-294) | Ltn1 Kiaa0714 Lister Rnf160 Zfp294 Znf294 | Q6A009 | 4 |
| E3 ubiquitin-protein ligase makorin-1 | Mkrn1 | E9QAG7 | 4 |
| E3 ubiquitin-protein ligase makorin-1 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase makorin-1) | Mkrn1 | Q9QXP6 | 4 |
| E3 ubiquitin-protein ligase NEDD4-like | Nedd4l | E9PXB7 | 4 |
| E3 ubiquitin-protein ligase pellino homolog 1 (Pellino-1) (EC 2.3.2.27) (RING-type E3 ubiquitin transferase pellino homolog 1) | Peli1 | Q8C669 | 4 |
| E3 ubiquitin-protein ligase RBX1 (EC 6.3.2.-) (RING finger protein 75) (RING-box protein 1) (Rbx1) [Cleaved into: E3 ubiquitin-protein ligase RBX1, N-terminally processed] | Rbx1 | P62878 | 4 |
| E3 ubiquitin-protein ligase RNF128 (EC 2.3.2.27) (Gene related to anergy in lymphocytes protein) (Goliath-related E3 ubiquitin-protein ligase 1) (RING finger protein 128) (RING-type E3 ubiquitin transferase RNF128) | Rnf128 Grail Greul1 MNCb-3816 | Q9D304 | 4 |
| E3 ubiquitin-protein ligase TRIM33 (EC 2.3.2.27) (Ectodermin homolog) (RING-type E3 ubiquitin transferase TRIM33) (Transcription intermediary factor 1-gamma) (TIF1-gamma) (Tripartite motif-containing protein 33) | Trim33 Kiaa1113 | Q99PP7 | 4 |
| E3 ubiquitin-protein ligase TRIM56 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase TRIM56) (Tripartite motif-containing protein 56) | Trim56 | Q80VI1 | 4 |
| E3 ubiquitin-protein ligase UBR2 (EC 2.3.2.27) (N-recognin-2) (RING-type E3 ubiquitin transferase UBR2) (Ubiquitin-protein ligase E3-alpha-2) (Ubiquitin-protein ligase E3-alpha-II) | Ubr2 Kiaa0349 | Q6WKZ8 | 4 |
| E3 ubiquitin-protein ligase UBR5 (EC 2.3.2.26) (E3 ubiquitin-protein ligase, HECT domain-containing 1) (HECT-type E3 ubiquitin transferase UBR5) (Hyperplastic discs protein homolog) | Ubr5 Edd Edd1 Kiaa0896 | Q80TP3 | 4 |
| Ectonucleoside triphosphate diphosphohydrolase 3 (Nucleoside triphosphate diphosphohydrolase-3) (EC 3.6.1.5) (Putative uncharacterized protein) | Entpd3 mCG_22707 | Q8BFW6 | 4 |
| Ectonucleotide pyrophosphatase/phosphodiesterase family member 3 (E-NPP 3) (Phosphodiesterase I beta) (PD-Ibeta) (Phosphodiesterase I/nucleotide pyrophosphatase 3) (CD antigen CD203c) [Includes: Alkaline phosphodiesterase I (EC 3.1.4.1); Nucleotide pyrophosphatase (NPPase) (EC 3.6.1.9) (Nucleotide diphosphatase)] | Enpp3 | Q6DYE8 | 4 |
| Electroneutral sodium bicarbonate exchanger 1 (Electroneutral Na+-driven Cl-HCO3 exchanger) (Solute carrier family 4 member 8) (k-NBC3) | Slc4a8 Kiaa0739 | Q8JZR6 | 4 |
| Ellis-van Creveld syndrome protein homolog | Evc | D3YUJ0 | 4 |
| Elongation factor 1-delta (Fragment) | Eef1d | E9QN08 | 4 |
| Elongator complex protein 4 (PAX6 neighbor gene protein) | Elp4 Paxneb | Q9ER73 | 4 |
| Elongin-A (EloA) (Elongin 110 kDa subunit) (RNA polymerase II transcription factor SIII subunit A1) (SIII p110) (Transcription elongation factor B polypeptide 3) | Eloa Tceb3 | Q8CB77 | 4 |
| Endonuclease domain-containing 1 protein (EC 3.1.30.-) | Endod1 Kiaa0830 | Q8C522 | 4 |
| Endophilin-B2 (SH3 domain-containing GRB2-like protein B2) | Sh3glb2 Kiaa1848 | Q8R3V5 | 4 |
| Enhancer of mRNA-decapping protein 3 (YjeF domain-containing protein 1) | Edc3 Yjdc | Q8K2D3 | 4 |
| Enhancer of rudimentary homolog (MCG7617, isoform CRA_a) | Erh mCG_7617 | G3UW85 | 4 |
| Enoyl-[acyl-carrier-protein] reductase, mitochondrial (EC 1.3.1.104) (2-enoyl thioester reductase) (Nuclear receptor-binding factor 1) (NRBF-1) | Mecr Nrbf1 | Q9DCS3 | 4 |
| Eph receptor A7, isoform CRA_b (Ephrin type-A receptor 7) | Epha7 mCG_14600 | A2BDQ4 | 4 |
| Ephrin type-A receptor 1 (mEpha1) (EC 2.7.10.1) (Embryonic stem cell kinase) (Tyrosine-protein kinase receptor ESK) | Epha1 Esk | Q60750 | 4 |
| Ephrin type-B receptor 4 (Putative uncharacterized protein) | Ephb4 | Q8C8K1 | 4 |
| Epidermal growth factor receptor substrate 15-like 1 (Epidermal growth factor receptor pathway substrate 15-related sequence) (Eps15-rs) (Eps15-related protein) (Eps15R) | Eps15l1 Eps15-rs Eps15R | Q60902 | 4 |
| Epoxide hydrolase (EC 3.3.2.9) | Ephx1 | E9PWK1 | 4 |
| Epsin-1 (EPS-15-interacting protein 1) (Intersectin-EH-binding protein 1) (Ibp1) | Epn1 | Q80VP1 | 4 |
| Equilibrative nucleoside transporter 3 (mENT3) (Solute carrier family 29 member 3) | Slc29a3 Ent3 | Q99P65 | 4 |
| ER membrane protein complex subunit 1 | Emc1 Kiaa0090 | Q8C7X2 | 4 |
| ER membrane protein complex subunit 3 (Transmembrane protein 111) | Emc3 Tmem111 | Q99KI3 | 4 |
| ERC protein 2 (CAZ-associated structural protein 1) (CAST1) | Erc2 Cast1 D14Ertd171e Kiaa0378 | Q6PH08 | 4 |
| Eukaryotic translation initiation factor 1A (eIF-1A) (Eukaryotic translation initiation factor 4C) (eIF-4C) | Eif1a | Q60872 | 4 |
| Exosome complex component RRP43 (Exosome component 8) (Ribosomal RNA-processing protein 43) | Exosc8 Rrp43 | Q9D753 | 4 |
| Exosome complex component RRP46 (Exosome component 5) (Ribosomal RNA-processing protein 46) | Exosc5 D7Wsu180e Rrp46 | Q9CRA8 | 4 |
| Exosome complex exonuclease RRP42 (Exosome component 7) (Ribosomal RNA-processing protein 42) | Exosc7 Rrp42 | Q9D0M0 | 4 |
| Exosome component 10 (EC 3.1.13.-) (Autoantigen PM/Scl 2 homolog) (Polymyositis/scleroderma autoantigen 2 homolog) | Exosc10 Pmscl2 | P56960 | 4 |
| F-box-like/WD repeat-containing protein TBL1XR1 (Nuclear receptor corepressor/HDAC3 complex subunit TBLR1) (TBL1-related protein 1) (Transducin beta-like 1X-related protein 1) | Tbl1xr1 Ira1 Tblr1 | Q8BHJ5 | 4 |
| F-box/WD repeat-containing protein 1A (Beta-TrCP protein E3RS-IkappaB) (Beta-transducin repeat-containing protein) (Beta-TrCP) (E3RSIkappaB) (mE3RS-IkappaB) (F-box and WD repeats protein beta-TrCP) (HOS) (Ubiquitin ligase FWD1) (pIkappaB-E3 receptor subunit) | Btrc Fbw1 Fbxw1 Fwd1 Kiaa4123 | Q3ULA2 | 4 |
| F-box/WD repeat-containing protein 8 (F-box and WD-40 domain-containing protein 8) | Fbxw8 | Q8BIA4 | 4 |
| Family with sequence similarity 171, member A1 | Fam171a1 | A2ATL0 | 4 |
| Far upstream element-binding protein 1 (Putative uncharacterized protein) | Fubp1 | Q3TUE1 | 4 |
| FERM, RhoGEF and pleckstrin domain-containing protein 2 | Farp2 | D3Z4C0 | 4 |
| Fibroblast growth factor receptor 2 (FGFR-2) (EC 2.7.10.1) (Keratinocyte growth factor receptor) (KGFR) (CD antigen CD332) | Fgfr2 Bek Ect1 | P21803 | 4 |
| Fibroblast growth factor receptor substrate 2 (FGFR substrate 2) (FGFR-signaling adaptor SNT) (FRS2-alpha) (Suc1-associated neurotrophic factor target 1) (SNT-1) | Frs2 Frs2a | Q8C180 | 4 |
| Follistatin-related protein 1 (Follistatin-like protein 1) (TGF-beta-inducible protein TSC-36) | Fstl1 Frp Fstl Tsc36 | Q62356 | 4 |
| Formin-like protein 2 | Fmnl2 | F8VPR2 | 4 |
| Fructose-2,6-bisphosphatase TIGAR (EC 3.1.3.46) (TP53-induced glycolysis and apoptosis regulator) (TP53-induced glycolysis regulatory phosphatase) | Tigar | Q8BZA9 | 4 |
| Fructose-bisphosphate aldolase (EC 4.1.2.13) | Aldoart2 | A6ZI47 | 4 |
| FRY-like transcription coactivator | Fryl | F8VQ05 | 4 |
| G-protein-signaling modulator 2 (Pins homolog) | Gpsm2 Lgn Pins | Q8VDU0 | 4 |
| G2/mitotic-specific cyclin-B1 | Ccnb1 Ccn-2 Ccnb1-rs13 Cycb Cycb1 | P24860 | 4 |
| Gag protein | 0 | Q6YIY0 | 4 |
| Gamma-aminobutyric acid receptor-associated protein-like 1 (GABA(A) receptor-associated protein-like 1) (Glandular epithelial cell protein 1) (GEC-1) | Gabarapl1 Apg8l Atg8l Gec1 MNCb-0091 | Q8R3R8 | 4 |
| Gamma-glutamyltransferase 7 (GGT 7) (EC 2.3.2.2) (Gamma-glutamyltransferase-like 3) (Gamma-glutamyltranspeptidase 7) (Glutathione hydrolase 7) (EC 3.4.19.13) [Cleaved into: Gamma-glutamyltransferase 7 heavy chain; Gamma-glutamyltransferase 7 light chain] | Ggt7 Ggtl3 | Q99JP7 | 4 |
| Gamma-soluble NSF attachment protein (Fragment) | Napg | D3Z4B2 | 4 |