| Alkylglycerone-phosphate synthase (Alkyl-DHAP synthase) (EC 2.5.1.26) | Agps | A2AL50 | 3 |
| Alpha-catulin (Alpha-catenin-related protein) (ACRP) (Catenin alpha-like protein 1) | Ctnnal1 Catnal1 | O88327 | 3 |
| Alpha-internexin (Alpha-Inx) (66 kDa neurofilament protein) (NF-66) (Neurofilament-66) | Ina | P46660 | 3 |
| Alpha-synuclein (Non-A beta component of AD amyloid) (Non-A4 component of amyloid precursor) (NACP) | Snca Syn | O55042 | 3 |
| Amino acid transporter | Slc1a5 | Q3UFR4 | 3 |
| AMP deaminase (EC 3.5.4.6) | Ampd2 mCG_4058 | A2AE27 | 3 |
| Amylo-1,6-glucosidase, 4-alpha-glucanotransferase | Agl | F8VPN4 | 3 |
| Amyloid beta A4 precursor protein-binding family A member 3 (Adapter protein X11gamma) (Neuron-specific X11L2 protein) (Neuronal Munc18-1-interacting protein 3) (Mint-3) | Apba3 Mint3 | O88888 | 3 |
| AN1-type zinc finger protein 2B (Fragment) | Zfand2b | E0CY18 | 3 |
| AN1-type zinc finger protein 5 (Zinc finger A20 domain-containing protein 2) (Zinc finger protein 216) | Zfand5 Za20d2 Zfp216 Znf216 | O88878 | 3 |
| Anamorsin (Cytokine-induced apoptosis inhibitor 1) (Fe-S cluster assembly protein DRE2 homolog) | Ciapin1 | Q8WTY4 | 3 |
| Anaphase-promoting complex subunit 7 (APC7) (Cyclosome subunit 7) (Prediabetic NOD sera-reactive autoantigen) | Anapc7 Apc7 | Q9WVM3 | 3 |
| Angio-associated migratory protein (Putative uncharacterized protein) | Aamp mCG_114812 | Q3TJ22 | 3 |
| Angiotensin-converting enzyme (ACE) (EC 3.2.1.-) (EC 3.4.15.1) (Dipeptidyl carboxypeptidase I) (Kininase II) (CD antigen CD143) [Cleaved into: Angiotensin-converting enzyme, soluble form] | Ace Dcp1 | P09470 | 3 |
| Anion exchange protein | Slc4a2 | A0A0R4J1K4 | 3 |
| Ankyrin repeat and SAM domain-containing protein 1A (Odin) | Anks1a Anks1 Kiaa0229 Odin | P59672 | 3 |
| Ankyrin repeat domain-containing protein 46 (Ankyrin repeat small protein) (ANK-S) | Ankrd46 | Q8BTZ5 | 3 |
| Anterior gradient protein 2 homolog (AG-2) (mAG-2) (Protein Gob-4) (Secreted cement gland protein XAG-2 homolog) | Agr2 Gob4 | O88312 | 3 |
| AP-1 complex subunit gamma-1 (Adaptor protein complex AP-1, gamma 1 subunit) (Putative uncharacterized protein) | Ap1g1 | Q8CBB7 | 3 |
| AP-1 complex subunit mu-2 (AP-mu chain family member mu1B) (Adaptor protein complex AP-1 subunit mu-2) (Adaptor-related protein complex 1 subunit mu-2) (Clathrin assembly protein complex 1 mu-2 medium chain 2) (Golgi adaptor HA1/AP1 adaptin mu-2 subunit) (Mu-adaptin 2) (Mu1B-adaptin) | Ap1m2 | Q9WVP1 | 3 |
| AP-3 complex subunit sigma-1 (AP-3 complex subunit sigma-3A) (Adaptor-related protein complex 3 subunit sigma-1) (Sigma-3A-adaptin) (Sigma3A-adaptin) (Sigma-adaptin 3a) | Ap3s1 | Q9DCR2 | 3 |
| Apolipoprotein L 7b | Apol7b | B1AQP7 | 3 |
| Arachidonate 15-lipoxygenase (15-LOX) (EC 1.13.11.33) (12/15-lipoxygenase) (12/15-LO) (Arachidonate 12-lipoxygenase, leukocyte-type) (12-LOX) (L-12LO) (EC 1.13.11.31) (Arachidonate omega-6 lipoxygenase) | Alox15 Alox12l | P39654 | 3 |
| Arf-GAP domain and FG repeat-containing protein 1 (HIV-1 Rev-binding protein homolog) (Nucleoporin-like protein RIP) | Agfg1 Hrb Rip | Q8K2K6 | 3 |
| Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 (Centaurin-beta-1) (Cnt-b1) | Acap1 Centb1 Kiaa0050 | Q8K2H4 | 3 |
| Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 (Centaurin-beta-2) (Cnt-b2) | Acap2 Centb2 Kiaa0041 | Q6ZQK5 | 3 |
| Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1 | Arap1 | E9PUB0 | 3 |
| Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 (130 kDa phosphatidylinositol 4,5-bisphosphate-dependent ARF1 GTPase-activating protein) (ADP-ribosylation factor-directed GTPase-activating protein 1) (ARF GTPase-activating protein 1) (Development and differentiation-enhancing factor 1) (DEF-1) (Differentiation-enhancing factor 1) (PIP2-dependent ARF1 GAP) | Asap1 Ddef1 Kiaa1249 Shag1 | Q9QWY8 | 3 |
| Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2 | Asap2 | D3YX85 | 3 |
| ATP synthase subunit alpha | Atp5a1 mCG_18273 | D3Z6F5 | 3 |
| ATP synthase subunit epsilon, mitochondrial (ATPase subunit epsilon) | Atp5e | P56382 | 3 |
| ATP synthase subunit f, mitochondrial | Atp5j2 | F8WHP8 | 3 |
| ATP synthase subunit gamma | Atp5c1 | Q8C2Q8 | 3 |
| ATP-binding cassette sub-family A member 1 (ATP-binding cassette transporter 1) (ABC-1) (ATP-binding cassette 1) | Abca1 Abc1 | P41233 | 3 |
| ATP-binding cassette sub-family B member 7, mitochondrial (ATP-binding cassette transporter 7) (ABC transporter 7 protein) | Abcb7 Abc7 | Q61102 | 3 |
| ATP-binding cassette sub-family B member 9 (ATP-binding cassette transporter 9) (ABC transporter 9 protein) (mABCB9) (TAP-like protein) (TAPL) | Abcb9 Kiaa1520 | Q9JJ59 | 3 |
| ATP-dependent RNA helicase DDX42 (EC 3.6.4.13) (DEAD box protein 42) | Ddx42 | Q810A7 | 3 |
| ATP-dependent RNA helicase DDX55 (EC 3.6.4.13) (DEAD box protein 55) | Ddx55 Kiaa1595 | Q6ZPL9 | 3 |
| ATPase family AAA domain-containing protein 2 (EC 3.6.1.3) | Atad2 | Q8CDM1 | 3 |
| Attractin-like protein 1 | Atrnl1 Alp Atrnl Kiaa0534 | Q6A051 | 3 |
| Autophagy-related protein 9 | Atg9a Apg9l1 Atg9 | Q3ZAQ4 | 3 |
| B-cell differentiation antigen CD72 (Lyb-2) (Lymphocyte antigen 32) (Ly-32) (CD antigen CD72) | Cd72 Ly-32 Ly32 Lyb-2 | P21855 | 3 |
| B-cell differentiation antigen CD72 (Putative uncharacterized protein) | Cd72 | Q3UB58 | 3 |
| B-cell receptor-associated protein 29 (BCR-associated protein 29) (Bap29) | Bcap29 Bap29 | Q61334 | 3 |
| Baculoviral IAP repeat-containing protein 6 | Birc6 | S4R1L5 | 3 |
| BC035947 protein (CDNA sequence BC035947) | BC035947 | B2RQY6 | 3 |
| Bcl-2-associated transcription factor 1 (Btf) | Bclaf1 Btf Kiaa0164 | Q8K019 | 3 |
| Beta-1,4-galactosyltransferase 1 (UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 1, isoform CRA_a) | B4galt1 mCG_9808 | B1AXY5 | 3 |
| Beta-1,4-glucuronyltransferase 1 (EC 2.4.1.-) (I-beta-1,3-N-acetylglucosaminyltransferase) (iGnT) (N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase) (Poly-N-acetyllactosamine extension enzyme) (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1) | B4gat1 B3gnt1 B3gnt6 | Q8BWP8 | 3 |
| Beta-secretase 2 | Bace2 | A0A0R4J0I8 | 3 |
| Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial [Includes: NAD-dependent methylenetetrahydrofolate dehydrogenase (EC 1.5.1.15); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)] | Mthfd2 Nmdmc | P18155 | 3 |
| Bis(5'-adenosyl)-triphosphatase enpp4 (EC 3.6.1.29) (AP3A hydrolase) (AP3Aase) (Ectonucleotide pyrophosphatase/phosphodiesterase family member 4) (E-NPP 4) (NPP-4) | Enpp4 Kiaa0879 | Q8BTJ4 | 3 |
| Blood vessel epicardial substance (mBVES) (Popeye domain-containing protein 1) (Popeye protein 1) | Bves Pop1 Popdc1 | Q9ES83 | 3 |
| BolA-like protein 2 | Bola2 | Q8BGS2 | 3 |
| Bone marrow proteoglycan (BMPG) (Proteoglycan 2) [Cleaved into: Eosinophil granule major basic protein (EMBP) (MBP)] | Prg2 Mbp-1 | Q61878 | 3 |
| BPI fold-containing family A member 1 (Palate lung and nasal epithelium clone protein) | Bpifa1 Plunc Splunc1 | P97361 | 3 |
| BPI fold-containing family B member 1 (Long palate, lung and nasal epithelium carcinoma-associated protein 1) | Bpifb1 Lplunc1 | Q61114 | 3 |
| Brain-specific serine protease 4 (Protease, serine, 22) | Prss22 mCG_147772 | Q7TML0 | 3 |
| Breakpoint cluster region protein (EC 2.7.11.1) | Bcr Kiaa3017 | Q6PAJ1 | 3 |
| Brefeldin A-inhibited guanine nucleotide-exchange protein 2 (Brefeldin A-inhibited GEP 2) (ADP-ribosylation factor guanine nucleotide-exchange factor 2) | Arfgef2 Arfgep2 Big2 | A2A5R2 | 3 |
| BRISC complex subunit Abro1 (Abraxas brother protein 1) (Protein FAM175B) | Fam175b Abro1 Kiaa0157 | Q3TCJ1 | 3 |
| Bromodomain adjacent to zinc finger domain protein 1A (Cbp146) | Baz1a Cbp146 | O88379 | 3 |
| Bromodomain and WD repeat domain containing 2, isoform CRA_a (WD repeat-containing protein 11) | Wdr11 Brwd2 mCG_22163 | G5E8J3 | 3 |
| Bromodomain-containing protein 4 (Mitotic chromosome-associated protein) (MCAP) | Brd4 Mcap | Q9ESU6 | 3 |
| BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1 (BTB/POZ domain-containing protein KCTD13) (Polymerase delta-interacting protein 1) | Kctd13 Poldip1 | Q8BGV7 | 3 |
| BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 | Kctd10 | F8WGQ9 | 3 |
| BTB/POZ domain-containing protein 17 (Galectin-3-binding protein-like) | Btbd17 | Q9DB72 | 3 |
| BTB/POZ domain-containing protein KCTD12 | Kctd12 | A0A0R4J2B2 | 3 |
| C-C motif chemokine 2 (Monocyte chemoattractant protein 1) (Monocyte chemotactic protein 1) (MCP-1) (Platelet-derived growth factor-inducible protein JE) (Small-inducible cytokine A2) | Ccl2 Je Mcp1 Scya2 | P10148 | 3 |
| C-type lectin domain family 10 member A (MMGL) (Macrophage asialoglycoprotein-binding protein 1) (M-ASGP-BP-1) (Macrophage galactose/N-acetylgalactosamine-specific lectin) | Clec10a Mgl Mgl1 | P49300 | 3 |
| C-type lectin domain family 11 member A (Lymphocyte secreted C-type lectin) (Osteolectin) (Stem cell growth factor) | Clec11a Scgf | O88200 | 3 |
| C-X-C motif chemokine 15 (Lungkine) (Small-inducible cytokine B15) | Cxcl15 Scyb15 | Q9WVL7 | 3 |
| C2 domain-containing protein 5 | C2cd5 5730419I09Rik | E9Q026 | 3 |
| CAAX prenyl protease 1 homolog (EC 3.4.24.84) (Farnesylated proteins-converting enzyme 1) (FACE-1) (Prenyl protein-specific endoprotease 1) (Zinc metalloproteinase Ste24 homolog) | Zmpste24 Face1 | Q80W54 | 3 |
| Cactin | Cactin | Q9CS00 | 3 |
| Cadherin EGF LAG seven-pass G-type receptor 1 | Celsr1 | O35161 | 3 |
| Cadherin EGF LAG seven-pass G-type receptor 2 | Celsr2 mCG_4064 | A2AEE7 | 3 |
| Cadherin-11 (OSF-4) (Osteoblast cadherin) (OB-cadherin) | Cdh11 Cad-11 | P55288 | 3 |
| Cadherin-4 (Retinal cadherin) (R-CAD) (R-cadherin) | Cdh4 | P39038 | 3 |
| Calcium-transporting ATPase (EC 3.6.3.8) | Atp2c1 | Q8BMS7 | 3 |
| Calcium-transporting ATPase type 2C member 1 (ATPase 2C1) (EC 3.6.3.8) (ATP-dependent Ca(2+) pump PMR1) | Atp2c1 Pmr1 | Q80XR2 | 3 |
| Calpain small subunit 1 | Capns1 | A0A0R4J1C2 | 3 |
| Calpain small subunit 2 (CSS2) (Calcium-dependent protease small subunit 2) | Capns2 | Q9D7J7 | 3 |
| Calpastatin (Calpain inhibitor) | Cast | P51125 | 3 |
| Calumenin (Calumenin, isoform CRA_b) (Cardiac calumenin isoform) (Putative uncharacterized protein) | Calu mCG_9131 | Q6XLQ8 | 3 |
| Canalicular multispecific organic anion transporter 2 (ATP-binding cassette sub-family C member 3) (Multidrug resistance-associated protein 3) | Abcc3 Cmoat2 Mrp3 | B2RX12 | 3 |
| CAP-Gly domain-containing linker protein 1 | Clip1 | D3Z2Z1 | 3 |
| CAP-Gly domain-containing linker protein 1 (Cytoplasmic linker protein 170) (CLIP-170) (Restin) | Clip1 Kiaa4046 Rsn | Q922J3 | 3 |
| Carbohydrate sulfotransferase 14 (EC 2.8.2.35) (Dermatan 4-sulfotransferase 1) (D4ST-1) | Chst14 D4st1 | Q80V53 | 3 |
| Carboxypeptidase (EC 3.4.16.-) | Ctsa Ppgb mCG_17533 | G3X8T3 | 3 |
| Carboxypeptidase M (CPM) (EC 3.4.17.12) | Cpm | Q80V42 | 3 |
| Carnitine O-acetyltransferase (Carnitine acetylase) (EC 2.3.1.7) (Carnitine acetyltransferase) (CAT) (CrAT) | Crat | P47934 | 3 |
| Carnitine O-palmitoyltransferase 1, liver isoform (CPT1-L) (EC 2.3.1.21) (Carnitine O-palmitoyltransferase I, liver isoform) (CPT I) (CPTI-L) (Carnitine palmitoyltransferase 1A) | Cpt1a Cpt-1 Cpt1 | P97742 | 3 |
| Casein kinase II subunit beta (CK II beta) (Fragment) | Csnk2b | G3UZJ5 | 3 |
| Caspase recruitment domain-containing protein 14 (Bcl10-interacting MAGUK protein 2) (Bimp2) | Card14 Bimp2 | Q99KF0 | 3 |
| Caspase-6 (CASP-6) (EC 3.4.22.59) (Apoptotic protease Mch-2) [Cleaved into: Caspase-6 subunit p18; Caspase-6 subunit p11] | Casp6 | O08738 | 3 |
| Cation-transporting ATPase 13A2 (EC 3.6.3.-) | Atp13a2 | Q9CTG6 | 3 |
| Cationic amino acid transporter 2 (CAT-2) (CAT2) (20.5) (Low affinity cationic amino acid transporter 2) (Solute carrier family 7 member 2) (T-cell early activation protein) (TEA) | Slc7a2 Atrc2 Tea | P18581 | 3 |
| Caveolin-2 | Cav2 | Q9WVC3 | 3 |
| CCR4-NOT transcription complex subunit 1 (Cnot1 protein) | Cnot1 | B7ZWL1 | 3 |