| 28S ribosomal protein S29, mitochondrial | Dap3 | A0A0R4J1B9 | 1 |
| 28S ribosomal protein S35, mitochondrial | Mrps35 | A0A0R4J0L6 | 1 |
| 28S ribosomal protein S35, mitochondrial (MRP-S35) (S35mt) | Mrps35 | Q8BJZ4 | 1 |
| 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase (Fragment) | Ebp | A2AC29 | 1 |
| 3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6) (3-hydroxyanthranilate oxygenase) (3-HAO) (3-hydroxyanthranilic acid dioxygenase) (HAD) | Haao | Q78JT3 | 1 |
| 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial (EC 3.1.2.4) (3-hydroxyisobutyryl-coenzyme A hydrolase) | Hibch | E0CX19 | 1 |
| 3-keto-steroid reductase (EC 1.1.1.270) (17-beta-hydroxysteroid dehydrogenase 7) (17-beta-HSD 7) (Estradiol 17-beta-dehydrogenase 7) (EC 1.1.1.62) | Hsd17b7 | O88736 | 1 |
| 3-ketoacyl-CoA thiolase B, peroxisomal (EC 2.3.1.16) (Acetyl-CoA acyltransferase B) (Beta-ketothiolase B) (Peroxisomal 3-oxoacyl-CoA thiolase B) | Acaa1b Acaa1 | Q8VCH0 | 1 |
| 3-ketodihydrosphingosine reductase (KDS reductase) (EC 1.1.1.102) (3-dehydrosphinganine reductase) (Follicular variant translocation protein 1 homolog) (FVT-1) | Kdsr Fvt1 | Q6GV12 | 1 |
| 3-oxo-5-beta-steroid 4-dehydrogenase (EC 1.3.1.3) (Aldo-keto reductase family 1 member D1) (Delta(4)-3-ketosteroid 5-beta-reductase) (Delta(4)-3-oxosteroid 5-beta-reductase) | Akr1d1 | Q8VCX1 | 1 |
| 3-phosphoinositide-dependent protein kinase 1 | Pdpk1 | F2Z3X6 | 1 |
| 3-phosphoinositide-dependent protein kinase 1 | Pdpk1 | F2Z400 | 1 |
| 3-phosphoinositide-dependent protein kinase 1 | Pdpk1 | F2Z3Z9 | 1 |
| 3-phosphoinositide-dependent protein kinase 1 (mPDK1) (EC 2.7.11.1) | Pdpk1 Pdk1 | Q9Z2A0 | 1 |
| 3-phosphoinositide-dependent protein kinase 1 (Putative uncharacterized protein) | Pdpk1 | Q3TRL2 | 1 |
| 39S ribosomal protein L10, mitochondrial (L10mt) (MRP-L10) | Mrpl10 | Q3TBW2 | 1 |
| 39S ribosomal protein L13, mitochondrial (L13mt) (MRP-L13) | Mrpl13 | Q9D1P0 | 1 |
| 39S ribosomal protein L16, mitochondrial (L16mt) (MRP-L16) | Mrpl16 | Q99N93 | 1 |
| 39S ribosomal protein L17, mitochondrial (L17mt) (MRP-L17) | Mrpl17 | Q9D8P4 | 1 |
| 39S ribosomal protein L2, mitochondrial | Mrpl2 | B1B1D8 | 1 |
| 39S ribosomal protein L2, mitochondrial (L2mt) (MRP-L2) | Mrpl2 | Q9D773 | 1 |
| 39S ribosomal protein L20, mitochondrial (L20mt) (MRP-L20) | Mrpl20 | Q9CQL4 | 1 |
| 39S ribosomal protein L24, mitochondrial (L24mt) (MRP-L24) | Mrpl24 | Q9CQ06 | 1 |
| 39S ribosomal protein L27, mitochondrial (L27mt) (MRP-L27) | Mrpl27 | Q99N92 | 1 |
| 39S ribosomal protein L3, mitochondrial | Mrpl3 | F6W7C7 | 1 |
| 39S ribosomal protein L3, mitochondrial (L3mt) (MRP-L3) | Mrpl3 | Q99N95 | 1 |
| 39S ribosomal protein L3, mitochondrial (Mitochondrial ribosomal protein L3, isoform CRA_a) | Mrpl3 mCG_14748 | D3Z456 | 1 |
| 39S ribosomal protein L32, mitochondrial (L32mt) (MRP-L32) (Heart-expressed gene 1 protein) | Mrpl32 Heg1 | Q9DCI9 | 1 |
| 39S ribosomal protein L40, mitochondrial (L40mt) (MRP-L40) (Nuclear localization signal-containing protein deleted in velocardiofacial syndrome homolog) | Mrpl40 Nlvcf | Q9Z2Q5 | 1 |
| 39S ribosomal protein L43, mitochondrial (L43mt) (MRP-L43) (Mitochondrial ribosomal protein bMRP36a) | Mrpl43 | Q99N89 | 1 |
| 39S ribosomal protein L45, mitochondrial (Fragment) | Mrpl45 | F6QAU7 | 1 |
| 39S ribosomal protein L45, mitochondrial (L45mt) (MRP-L45) | Mrpl45 | Q9D0Q7 | 1 |
| 39S ribosomal protein L46, mitochondrial (L46mt) (MRP-L46) | Mrpl46 | Q9EQI8 | 1 |
| 39S ribosomal protein L48, mitochondrial | Mrpl48 | E9QPQ8 | 1 |
| 39S ribosomal protein L53, mitochondrial (L53mt) (MRP-L53) | Mrpl53 | Q9D1H8 | 1 |
| 39S ribosomal protein L9, mitochondrial (L9mt) (MRP-L9) | Mrpl9 | Q99N94 | 1 |
| 39S ribosomal protein L9, mitochondrial (Putative uncharacterized protein) | Mrpl9 | Q3UK02 | 1 |
| 4-hydroxyphenylpyruvate dioxygenase (Fragment) | Hpd | F6X9Z6 | 1 |
| 40S ribosomal protein S15a (Fragment) | Rps15a | F8WJ41 | 1 |
| 40S ribosomal protein S15a (Fragment) | Rps15a | D3Z712 | 1 |
| 40S ribosomal protein S19 (Fragment) | Rps19 | D3YUG3 | 1 |
| 40S ribosomal protein S26 | Rps26 mCG_18667 mCG_9347 | Q497N1 | 1 |
| 40S ribosomal protein S27 | Rps27l mCG_1230 | D3YYB0 | 1 |
| 40S ribosomal protein S3 | Rps3 | D3YV43 | 1 |
| 40S ribosomal protein S30 | Fau Gm9843 mCG_11741 | Q642K5 | 1 |
| 40S ribosomal protein S4 | Rps4l 1110033J19Rik Rps4y2 mCG_49215 | Q3V1Z5 | 1 |
| 4Cytl1 protein (Fragment) | Cytl1 4Cytl1 Cyt1 | Q6P536 | 1 |
| 4F2 cell-surface antigen heavy chain (Fragment) | Slc3a2 | A0A0U1RP32 | 1 |
| 5'-3' exoribonuclease 1 | Xrn1 | F8VQ87 | 1 |
| 5'-AMP-activated protein kinase subunit beta-1 (Protein kinase, AMP-activated, beta 1 non-catalytic subunit, isoform CRA_a) | Prkab1 mCG_20709 | S4R2R1 | 1 |
| 5'-AMP-activated protein kinase subunit gamma-2 (Fragment) | Prkag2 | D3YUS1 | 1 |
| 5'-AMP-activated protein kinase subunit gamma-2 (Putative uncharacterized protein) | Prkag2 | Q8BIQ9 | 1 |
| 5'-nucleotidase domain containing 2 (5'-nucleotidase domain-containing 2) | Nt5dc2 | Q91X76 | 1 |
| 5'-nucleotidase domain-containing protein 1 | Nt5dc1 | E9QN01 | 1 |
| 5'-nucleotidase, cytosolic II, isoform CRA_b (Cytosolic purine 5'-nucleotidase) | Nt5c2 mCG_22001 | G3X9J6 | 1 |
| 5-azacytidine-induced protein 2 (Fragment) | Azi2 | D3Z7S3 | 1 |
| 5-azacytidine-induced protein 2 (Fragment) | Azi2 | F7A092 | 1 |
| 5-azacytidine-induced protein 2 (NF-kappa-B-activating kinase-associated protein 1) (Nak-associated protein 1) | Azi2 Az2 Nap1 Tbkp2 | Q9QYP6 | 1 |
| 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) (5,10-methenyl-tetrahydrofolate synthetase) (MTHFS) (Methenyl-THF synthetase) | Mthfs | Q9D110 | 1 |
| 5-hydroxyisourate hydrolase (HIU hydrolase) (HIUHase) (EC 3.5.2.17) (Transthyretin-related protein) | Urah | Q9CRB3 | 1 |
| 5-methylcytosine rRNA methyltransferase NSUN4 (EC 2.1.1.-) (NOL1/NOP2/Sun domain family member 4) (Sperm head and tail associated protein) | Nsun4 Shtap | Q9CZ57 | 1 |
| 52 kDa repressor of the inhibitor of the protein kinase (p52rIPK) (58 kDa interferon-induced protein kinase-interacting protein) (p58IPK-interacting protein) (THAP domain-containing protein 0) (THAP domain-containing protein 12) | Thap12 Prkrir Thap0 | Q9CUX1 | 1 |
| 55 kDa erythrocyte membrane protein | Mpp1 | A2AN84 | 1 |
| 55 kDa erythrocyte membrane protein (Fragment) | Mpp1 | B7ZCM0 | 1 |
| 6-phosphofructo-2-kinase/fructose-2, 6-biphosphatase 2 (6-phosphofructo-2-kinase/fructose-2, 6-biphosphatase 2, isoform CRA_b) (6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2) (Putative uncharacterized protein) | Pfkfb2 mCG_2633 | Q6GTL7 | 1 |
| 6-phosphofructo-2-kinase/fructose-2, 6-biphosphatase 2, isoform CRA_a (6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase 2 variant 5) (EC 2.7.1.105) (6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2) | Pfkfb2 mCG_2633 | B2Z893 | 1 |
| 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase 2 variant 4 (EC 2.7.1.105) (6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2) | Pfkfb2 | B2Z892 | 1 |
| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2 (6PF-2-K/Fru-2,6-P2ase 2) (PFK/FBPase 2) (6PF-2-K/Fru-2,6-P2ase heart-type isozyme) [Includes: 6-phosphofructo-2-kinase (EC 2.7.1.105); Fructose-2,6-bisphosphatase (EC 3.1.3.46)] | Pfkfb2 | P70265 | 1 |
| 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) | Pgd | Q91YT9 | 1 |
| 6-phosphogluconolactonase (6-phosphogluconolactonase, isoform CRA_b) | Pgls mCG_10369 | D3Z4X1 | 1 |
| 6-phosphogluconolactonase (Putative uncharacterized protein) | Pgls | Q8CBG6 | 1 |
| 6.8 kDa mitochondrial proteolipid | Mp68 | P56379 | 1 |
| 60S ribosomal protein L18a | Rpl18a | Q3THJ0 | 1 |
| 60S ribosomal protein L23 (Fragment) | Rpl23 | A2A6F8 | 1 |
| 60S ribosomal protein L29 | Rpl29 Gm10709 mCG_19505 | D3Z1N9 | 1 |
| 60S ribosomal protein L29 | Gm3550 mCG_123916 | W4VSN7 | 1 |
| 60S ribosomal protein L5 (Fragment) | Rpl5 | D3YYV8 | 1 |
| 60S ribosomal protein L9 | Rpl9 | D3Z629 | 1 |
| 60S ribosome subunit biogenesis protein NIP7 homolog | Nip7 | E9Q109 | 1 |
| 72 kDa inositol polyphosphate 5-phosphatase (EC 3.1.3.36) (Phosphatidylinositol 4,5-bisphosphate 5-phosphatase) (Phosphatidylinositol polyphosphate 5-phosphatase type IV) | Inpp5e | Q9JII1 | 1 |
| 85/88 kDa calcium-independent phospholipase A2 (CaI-PLA2) (EC 3.1.1.4) (Group VI phospholipase A2) (GVI PLA2) (Intracellular membrane-associated calcium-independent phospholipase A2 beta) (iPLA2-beta) (Patatin-like phospholipase domain-containing protein 9) (PNPLA9) | Pla2g6 Pnpla9 | P97819 | 1 |
| A disintegrin and metallopeptidase domain 6B (ADAM6b) | Adam6b | Q6IMH7 | 1 |
| A disintegrin and metalloproteinase with thrombospondin motifs 13 (ADAM-TS 13) (ADAM-TS13) (ADAMTS-13) (EC 3.4.24.87) (von Willebrand factor-cleaving protease) (vWF-CP) (vWF-cleaving protease) | Adamts13 Gm710 | Q769J6 | 1 |
| A disintegrin and metalloproteinase with thrombospondin motifs 2 (ADAM-TS 2) (ADAM-TS2) (ADAMTS-2) (EC 3.4.24.14) (Procollagen I N-proteinase) (PC I-NP) (Procollagen I/II amino propeptide-processing enzyme) (Procollagen N-endopeptidase) (pNPI) | Adamts2 | Q8C9W3 | 1 |
| A disintegrin and metalloproteinase with thrombospondin motifs 20 (ADAM-TS 20) (ADAM-TS20) (ADAMTS-20) (EC 3.4.24.-) | Adamts20 | P59511 | 1 |
| A disintegrin and metalloproteinase with thrombospondin motifs 4 (Putative uncharacterized protein) | Adamts4 | Q3TNX8 | 1 |
| A disintegrin and metalloproteinase with thrombospondin motifs 8 (ADAM-TS 8) (ADAM-TS8) (ADAMTS-8) (EC 3.4.24.-) (METH-2) | Adamts8 | P57110 | 1 |
| A disintegrin-like and metallopeptidase (Reprolysin type) with thrombospondin type 1 motif, 14 (A disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14) (MCG122067) | Adamts14 mCG_122067 | B2RXX5 | 1 |
| A kinase (PRKA) anchor protein 11 | Akap11 | E9Q774 | 1 |
| A kinase (PRKA) anchor protein 11 | Akap11 | E9Q777 | 1 |
| A-kinase anchor protein 10, mitochondrial (AKAP-10) (Dual specificity A kinase-anchoring protein 2) (D-AKAP-2) (Protein kinase A-anchoring protein 10) (PRKA10) | Akap10 | O88845 | 1 |
| A-kinase anchor protein 13 (AKAP-13) (AKAP-Lbc) | Akap13 Brx | E9Q394 | 1 |
| A-kinase anchor protein 2 | Akap2 | A2API8 | 1 |
| A-kinase anchor protein 3 (AKAP-3) (A-kinase anchor protein 110 kDa) (AKAP 110) (Protein kinase A-anchoring protein 3) (PRKA3) | Akap3 Akap110 | O88987 | 1 |
| A-kinase anchor protein 8-like (AKAP8-like protein) (Neighbor of A-kinase-anchoring protein 95) (Neighbor of AKAP95) | Akap8l Nakap Nakap95 | Q9R0L7 | 1 |
| A-kinase anchor protein 9 | Akap9 | E9QQ10 | 1 |
| A230054D04Rik protein (Fragment) | Bod1l A230054D04Rik AF013969 | Q6P8H7 | 1 |
| Abelson tyrosine-protein kinase 2 (EC 2.7.10.2) (Abelson murine leukemia viral oncogene homolog 2) (Abelson-related gene protein) (Tyrosine-protein kinase ARG) | Abl2 Arg | Q4JIM5 | 1 |
| ABI gene family member 3 (New molecule including SH3) (Nesh) | Abi3 Nesh | Q8BYZ1 | 1 |
| Abl interactor 1 | Abi1 | B7ZCU0 | 1 |