| Dynactin subunit 1 | Dctn1 | E9Q3M3 | 1 |
| Dynactin subunit 1 | Dctn1 | D3YX34 | 1 |
| Dynamin-1 | Dnm1 | A0A0J9YUE9 | 1 |
| Dynamin-2 | Dnm2 | G3X9G4 | 1 |
| Dynamin-like 120 kDa protein, mitochondrial | Opa1 | H7BX01 | 1 |
| Dynamin-like 120 kDa protein, mitochondrial (Fragment) | Opa1 | F6U775 | 1 |
| Dynein heavy chain 12, axonemal (Axonemal beta dynein heavy chain 12) (Axonemal dynein heavy chain 12-like protein) (Axonemal dynein heavy chain 7-like protein) (Ciliary dynein heavy chain 12) | Dnah12 Dnah12l Dnah7l Dnahc12 Dnahc7l | Q3V0Q1 | 1 |
| Dynein heavy chain 17, axonemal (Axonemal beta dynein heavy chain 17) (Ciliary dynein heavy chain 17) | Dnah17 Dnahc17 Kiaa3028 | Q69Z23 | 1 |
| Dynein heavy chain domain 1 (Mitochondrial import inner membrane translocase subunit Tim10 B) | Timm10b Dnhd1 Fxc1 | D6RG99 | 1 |
| Dynein light chain 2, cytoplasmic | Dynll2 | D6RIN4 | 1 |
| Dynein light chain Tctex-type 3 (Protein 91/23) (T-complex-associated testis-expressed 1-like) | Dynlt3 Tcte1l | P56387 | 1 |
| Dynein, axonemal, heavy chain 10 | Dnah10 Dnahc10 | D3YYQ8 | 1 |
| Dynein, axonemal, heavy chain 11 | Dnah11 Dnahc11 | E9Q7N9 | 1 |
| Dystonin | Dst | E9Q9X1 | 1 |
| Dystonin (Bullous pemphigoid antigen 1) (BPA) (Dystonia musculorum protein) (Hemidesmosomal plaque protein) (Microtubule actin cross-linking factor 2) | Dst Bpag1 Macf2 | E9PXE5 | 1 |
| Dystonin (Bullous pemphigoid antigen 1) (BPA) (Dystonia musculorum protein) (Hemidesmosomal plaque protein) (Microtubule actin cross-linking factor 2) | Dst Bpag1 Macf2 | E9QL23 | 1 |
| Dystrobrevin | Dtnb | G3UYM7 | 1 |
| Dystrobrevin | Dtnb | G3UZ87 | 1 |
| Dystrobrevin | Dtnb | Q8C8Z9 | 1 |
| Dystrobrevin | Dtna | Q8CFR5 | 1 |
| Dystrobrevin | Dtnb | Q8K0N0 | 1 |
| Dystrobrevin alpha (DTN-A) (Alpha-dystrobrevin) | Dtna Dtn | Q9D2N4 | 1 |
| Dystrophin (Dystrophin 71) | Dmd | A2A9Z2 | 1 |
| Dystrophin (Dystrophin Dp71a) | Dmd | A2A9Z1 | 1 |
| E3 ubiquitin-protein ligase ARIH1 | Arih1 | H7BWY7 | 1 |
| E3 ubiquitin-protein ligase ARIH1 | Arih1 | H9KV21 | 1 |
| E3 ubiquitin-protein ligase CBL | Cbl | A0A0X1KG61 | 1 |
| E3 ubiquitin-protein ligase DTX4 (EC 2.3.2.27) (Protein deltex-4) (Deltex4) (RING-type E3 ubiquitin transferase DTX4) | Dtx4 | Q6PDK8 | 1 |
| E3 ubiquitin-protein ligase DZIP3 | Dzip3 | E9QNZ2 | 1 |
| E3 ubiquitin-protein ligase DZIP3 (EC 2.3.2.27) (DAZ-interacting protein 3 homolog) (RING-type E3 ubiquitin transferase DZIP3) | Dzip3 Kiaa0675 | Q7TPV2 | 1 |
| E3 ubiquitin-protein ligase FANCL (EC 2.3.2.27) (Fanconi anemia group L protein homolog) (Proliferation of germ cells protein) (RING-type E3 ubiquitin transferase FANCL) | Fancl Phf9 Pog | Q9CR14 | 1 |
| E3 ubiquitin-protein ligase LRSAM1 (EC 2.3.2.27) (Leucine-rich repeat and sterile alpha motif-containing protein 1) (RING-type E3 ubiquitin transferase LRSAM1) (Tsg101-associated ligase) | Lrsam1 | Q80ZI6 | 1 |
| E3 ubiquitin-protein ligase MARCH5 (EC 2.3.2.27) (Membrane-associated RING finger protein 5) (Membrane-associated RING-CH protein V) (MARCH-V) (RING-type E3 ubiquitin transferase MARCH5) | March5 | Q3KNM2 | 1 |
| E3 ubiquitin-protein ligase MARCH5 (MCG13921, isoform CRA_c) | March5 mCG_13921 | A0A0R4J1H0 | 1 |
| E3 ubiquitin-protein ligase MARCH8 (EC 2.3.2.27) (Cellular modulator of immune recognition) (c-MIR) (Membrane-associated RING finger protein 8) (Membrane-associated RING-CH protein VIII) (MARCH-VIII) (RING-type E3 ubiquitin transferase MARCH8) | March8 Mir | Q9DBD2 | 1 |
| E3 ubiquitin-protein ligase Midline-1 (EC 2.3.2.27) (Midin) (RING finger protein Midline-1) (RING-type E3 ubiquitin transferase Midline-1) (Tripartite motif-containing protein 18) | Mid1 Fxy Trim18 | O70583 | 1 |
| E3 ubiquitin-protein ligase MYCBP2 | Mycbp2 | E9PUJ6 | 1 |
| E3 ubiquitin-protein ligase MYCBP2 (Fragment) | Mycbp2 | F6SMY7 | 1 |
| E3 ubiquitin-protein ligase MYCBP2 (Fragment) | Mycbp2 | F6T4V9 | 1 |
| E3 ubiquitin-protein ligase NRDP1 (EC 2.3.2.27) (RING finger protein 41) (RING-type E3 ubiquitin transferase NRDP1) | Rnf41 Flrf Nrdp1 | Q8BH75 | 1 |
| E3 ubiquitin-protein ligase Praja-1 (Praja1) (EC 2.3.2.27) (RING-type E3 ubiquitin transferase Praja-1) | Pja1 | O55176 | 1 |
| E3 ubiquitin-protein ligase RAD18 | Rad18 | D3Z733 | 1 |
| E3 ubiquitin-protein ligase RAD18 | Rad18 | D3Z734 | 1 |
| E3 ubiquitin-protein ligase RAD18 | Rad18 | E9Q392 | 1 |
| E3 ubiquitin-protein ligase RAD18 (EC 2.3.2.27) (Postreplication repair protein RAD18) (mRAD18Sc) (RING-type E3 ubiquitin transferase RAD18) | Rad18 Rad18sc | Q9QXK2 | 1 |
| E3 ubiquitin-protein ligase RAD18 (RAD18 homolog (S. cerevisiae), isoform CRA_d) | Rad18 mCG_128966 | W4VSP9 | 1 |
| E3 ubiquitin-protein ligase RLIM (EC 2.3.2.27) (LIM domain-interacting RING finger protein) (RING finger LIM domain-binding protein) (R-LIM) (RING finger protein 12) (RING-type E3 ubiquitin transferase RLIM) | Rlim Rnf12 | Q9WTV7 | 1 |
| E3 ubiquitin-protein ligase RNF115 (EC 2.3.2.27) (RING finger protein 115) (RING-type E3 ubiquitin transferase RNF115) (Rabring 7) (Zinc finger protein 364) | Rnf115 Zfp364 Znf364 | Q9D0C1 | 1 |
| E3 ubiquitin-protein ligase RNF138 (EC 2.3.2.27) (RING finger protein 138) (RING-type E3 ubiquitin transferase RNF138) | Rnf138 Trif | Q9CQE0 | 1 |
| E3 ubiquitin-protein ligase RNF14 (EC 2.3.2.-) (Androgen receptor-associated protein 54) (Protein Triad2) (RING finger protein 14) | Rnf14 Ara54 Triad2 | Q9JI90 | 1 |
| E3 ubiquitin-protein ligase RNF169 (EC 2.3.2.27) (RING finger protein 169) (RING-type E3 ubiquitin transferase RNF169) | Rnf169 Kiaa1991 | E9Q7F2 | 1 |
| E3 ubiquitin-protein ligase RNF182 (EC 2.3.2.27) (RING finger protein 182) (RING-type E3 ubiquitin transferase RNF182) | Rnf182 | Q8C432 | 1 |
| E3 ubiquitin-protein ligase RNF213 (EC 2.3.2.27) (EC 3.6.4.-) (Mysterin) (RING finger protein 213) (RING-type E3 ubiquitin transferase RNF213) | Rnf213 Mystr | F7A6H4 | 1 |
| E3 ubiquitin-protein ligase RNF25 | Rnf25 | E9Q446 | 1 |
| E3 ubiquitin-protein ligase RNF25 (EC 2.3.2.27) (RING finger protein 25) (RING finger protein AO7) (RING-type E3 ubiquitin transferase RNF25) | Rnf25 | Q9QZR0 | 1 |
| E3 ubiquitin-protein ligase SH3RF1 | Sh3rf1 | E9QQ33 | 1 |
| E3 ubiquitin-protein ligase SH3RF1 (EC 2.3.2.27) (Plenty of SH3s) (Protein POSH) (RING-type E3 ubiquitin transferase SH3RF1) (SH3 domain-containing RING finger protein 1) (SH3 multiple domains protein 2) | Sh3rf1 Kiaa1494 Posh Sh3md2 | Q69ZI1 | 1 |
| E3 ubiquitin-protein ligase SMURF1 | Smurf1 | E9PYU8 | 1 |
| E3 ubiquitin-protein ligase synoviolin | Syvn1 | D3Z1Y1 | 1 |
| E3 ubiquitin-protein ligase synoviolin | Syvn1 | E9QQ99 | 1 |
| E3 ubiquitin-protein ligase synoviolin (EC 2.3.2.27) (RING-type E3 ubiquitin transferase synoviolin) (Synovial apoptosis inhibitor 1) | Syvn1 Hrd1 Kiaa1810 | Q9DBY1 | 1 |
| E3 ubiquitin-protein ligase TRAIP (EC 2.3.2.27) (RING-type E3 ubiquitin transferase TRAIP) (TRAF-interacting protein) | Traip Trip | Q8VIG6 | 1 |
| E3 ubiquitin-protein ligase TRIM33 | Trim33 | E9QME5 | 1 |
| E3 ubiquitin-protein ligase TRIM33 | Trim33 | E9QP19 | 1 |
| E3 ubiquitin-protein ligase TRIM37 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase TRIM37) (Tripartite motif-containing protein 37) | Trim37 Kiaa0898 | Q6PCX9 | 1 |
| E3 ubiquitin-protein ligase TRIM41 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase TRIM41) (Tripartite motif-containing protein 41) | Trim41 | Q5NCC3 | 1 |
| E3 ubiquitin-protein ligase TRIM56 | Trim56 | A0A0R4J0Q6 | 1 |
| E3 ubiquitin-protein ligase TRIM63 | Trim63 | A2A9L4 | 1 |
| E3 ubiquitin-protein ligase TRIM71 (EC 2.3.2.27) (Protein lin-41 homolog) (mLin41) (RING-type E3 ubiquitin transferase TRIM71) (Tripartite motif-containing protein 71) | Trim71 Gm1127 Lin41 | Q1PSW8 | 1 |
| E3 ubiquitin-protein ligase TTC3 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase TTC3) (TPR repeat protein D) (Mtprd) | Ttc3 Kiaa4119 | O88196 | 1 |
| E3 ubiquitin-protein ligase TTC3 (Tetratricopeptide repeat domain 3, isoform CRA_b) | Ttc3 mCG_19601 | G5E8T2 | 1 |
| E3 ubiquitin-protein ligase UBR1 (EC 2.3.2.27) (N-recognin-1) (RING-type E3 ubiquitin transferase UBR1) (Ubiquitin-protein ligase E3-alpha-1) (Ubiquitin-protein ligase E3-alpha-I) | Ubr1 | O70481 | 1 |
| E3 ubiquitin-protein ligase UBR5 | Ubr5 | E9Q2H1 | 1 |
| E3 ubiquitin-protein ligase ZNRF1 (EC 2.3.2.27) (Nerve injury-induced gene 283 protein) (RING-type E3 ubiquitin transferase ZNRF1) (Zinc/RING finger protein 1) | Znrf1 Nin283 | Q91V17 | 1 |
| E3 ubiquitin-protein ligase ZNRF2 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase ZNRF2) (Zinc/RING finger protein 2) | Znrf2 | Q71FD5 | 1 |
| E3 UFM1-protein ligase 1 (EC 6.3.2.-) | Ufl1 Kiaa0776 | Q8CCJ3 | 1 |
| Ectonucleoside triphosphate diphosphohydrolase 2 (Ectonucleoside triphosphate diphosphohydrolase 2, isoform CRA_b) | Entpd2 mCG_20290 | Q921R1 | 1 |
| Ectonucleoside triphosphate diphosphohydrolase 6 (Ectonucleoside triphosphate diphosphohydrolase 6, isoform CRA_a) (Putative uncharacterized protein) | Entpd6 mCG_16316 | Q3U0P5 | 1 |
| Ectonucleoside triphosphate diphosphohydrolase 7 (NTPDase 7) (EC 3.6.1.-) (Lysosomal apyrase-like protein 1) | Entpd7 Kiaa4066 Lalp1 | Q3TCT4 | 1 |
| Ectonucleotide pyrophosphatase/phosphodiesterase 1, isoform CRA_d (Ectonucleotide pyrophosphatase/phosphodiesterase family member 1) | Enpp1 mCG_9001 | G3X9S2 | 1 |
| Ectonucleotide pyrophosphatase/phosphodiesterase family member 5 (E-NPP 5) (NPP-5) (EC 3.1.-.-) | Enpp5 | Q9EQG7 | 1 |
| Ectonucleotide pyrophosphatase/phosphodiesterase family member 6 (E-NPP 6) (NPP-6) (EC 3.1.4.-) (EC 3.1.4.38) (Choline-specific glycerophosphodiester phosphodiesterase) (Glycerophosphocholine cholinephosphodiesterase) (GPC-Cpde) | Enpp6 | Q8BGN3 | 1 |
| Eef1d protein (Elongation factor 1-delta) (MCG22130, isoform CRA_b) | Eef1d mCG_22130 | Q91VK2 | 1 |
| EF-hand calcium-binding domain-containing protein 14 | Efcab14 Kiaa0494 | Q8BGQ6 | 1 |
| EF-hand calcium-binding domain-containing protein 14 | Efcab14 4732418C07Rik | A2A8T9 | 1 |
| EF-hand calcium-binding domain-containing protein 14 | Efcab14 4732418C07Rik | Q6PCQ6 | 1 |
| EF-hand calcium-binding domain-containing protein 6 (DJ-1-binding protein) (DJBP) | Efcab6 Djbp Kiaa1672 | Q6P1E8 | 1 |
| EF-hand calcium-binding domain-containing protein 7 | Efcab7 Kiaa1799 | Q8VDY4 | 1 |
| EF-hand calcium-binding domain-containing protein 7 | Efcab7 | F6XAI7 | 1 |
| EF-hand domain-containing family member B | Efhb | Q8CDU5 | 1 |
| EF-hand domain-containing protein D2 (Swiprosin-1) | Efhd2 Sws1 | Q9D8Y0 | 1 |
| EH domain-binding protein 1-like protein 1 (RIKEN cDNA G430002G23, isoform CRA_a) | Ehbp1l1 G430002G23Rik mCG_11792 | G5E8Y6 | 1 |
| eIF-2-alpha kinase GCN2 | Eif2ak4 | A2AUM0 | 1 |
| eIF-2-alpha kinase GCN2 | Eif2ak4 | A2AUM1 | 1 |
| eIF-2-alpha kinase GCN2 | Eif2ak4 | A2AUM2 | 1 |
| eIF-2-alpha kinase GCN2 (Eukaryotic translation initiation factor 2-alpha kinase 4) (EC 2.7.11.1) (GCN2-like protein) (mGCN2) | Eif2ak4 Gcn2 Kiaa1338 | Q9QZ05 | 1 |
| ELAV-like protein 3 (Hu-antigen C) (HuC) | Elavl3 Huc | Q60900 | 1 |
| ELKS/Rab6-interacting/CAST family member 1 | Erc1 | V9GWT6 | 1 |
| ELKS/Rab6-interacting/CAST family member 1 | Erc1 | V9GXH3 | 1 |
| ELKS/Rab6-interacting/CAST family member 1 (Rab6 interacting protein 2, isoform CRA_a) | Erc1 Rab6ip2 mCG_131716 | V9GXF0 | 1 |