| Protein SFI1 homolog | Sfi1 Kiaa0542 | Q3UZY0 | 1 |
| Protein Shroom2 (SHROOM2) | Shroom2 | A7TU71 | 1 |
| Protein Shroom4 | Shroom4 Kiaa1202 | Q1W617 | 1 |
| Protein Smaug homolog 1 (Smaug 1) (mSmaug 1) (Sterile alpha motif domain-containing protein 4A) | Samd4a Samd4 Smaug1 | Q8CBY1 | 1 |
| Protein SMG5 (EST1-like protein B) (SMG-5 homolog) | Smg5 Est1b Kiaa1089 | Q6ZPY2 | 1 |
| Protein SOGA1 (SOGA family member 1) (Suppressor of glucose by autophagy) (Suppressor of glucose, autophagy-associated protein 1) [Cleaved into: N-terminal form; C-terminal 80 kDa form (80-kDa SOGA fragment)] | Soga1 Soga | E1U8D0 | 1 |
| Protein SON | Son | H9KV00 | 1 |
| Protein SON | Son | H9KV15 | 1 |
| Protein Spindly (Coiled-coil domain-containing protein 99) (Spindle apparatus coiled-coil domain-containing protein 1) | Spdl1 Ccdc99 | Q923A2 | 1 |
| Protein spinster homolog 1 | Spns1 | Q8R0G7 | 1 |
| Protein spinster homolog 1 | Spns1 | D3YTR6 | 1 |
| Protein spinster homolog 1 | Spns1 | D3YWA9 | 1 |
| Protein spinster homolog 1 (Fragment) | Spns1 | D3YWU4 | 1 |
| Protein sprouty homolog 1 (Spry-1) | Spry1 | Q9QXV9 | 1 |
| Protein sprouty homolog 4 (Spry-4) | Spry4 | Q9WTP2 | 1 |
| Protein TANC2 (Tetratricopeptide repeat, ankyrin repeat and coiled-coil domain-containing protein 2) | Tanc2 Kiaa1148 | A2A690 | 1 |
| Protein TBRG4 | Tbrg4 | E9PUT1 | 1 |
| Protein THEMIS (Grb2-associating protein) (Gasp) (Protein thylex) (Thymocyte-expressed molecule involved in selection) | Themis | Q8BGW0 | 1 |
| Protein THEMIS2 (Induced by contact to basement membrane 1 protein) (Protein ICB-1) (Thymocyte-expressed molecule involved in selection protein 2) | Themis2 Icb1 | Q91YX0 | 1 |
| Protein timeless homolog (Fragment) | Timeless | H7BX89 | 1 |
| Protein TMEPAI (NEDD4 WW domain-binding protein 4) (Prostate transmembrane protein androgen induced 1) (Transmembrane prostate androgen-induced protein) | Pmepa1 N4wbp4 Tmepai | Q9D7R2 | 1 |
| Protein transport protein Sec24A | Sec24a | A2AA71 | 1 |
| Protein transport protein Sec61 subunit gamma | Sec61g | P60060 | 1 |
| Protein TSSC4 | Tssc4 MNCb-3063 | Q9JHE7 | 1 |
| Protein tweety homolog 1 (mTTY1) | Ttyh1 | Q9D3A9 | 1 |
| Protein tyrosine phosphatase type IVA 3 | Ptp4a3 | E9PXS4 | 1 |
| Protein tyrosine phosphatase type IVA 3 (EC 3.1.3.48) (Protein-tyrosine phosphatase 4a3) (Protein-tyrosine phosphatase of regenerating liver 3) (PRL-3) | Ptp4a3 Prl3 | Q9D658 | 1 |
| Protein tyrosine phosphatase, non-receptor type 13 (Tyrosine-protein phosphatase non-receptor type 13) | Ptpn13 mCG_8763 | G5E8B1 | 1 |
| Protein tyrosine phosphatase, receptor type, D (Receptor-type tyrosine-protein phosphatase delta) | Ptprd | B9EJA3 | 1 |
| Protein unc-119 homolog A | Unc119 | B1AQD9 | 1 |
| Protein unc-80 homolog (Fragment) | Unc80 | F6ZAB0 | 1 |
| Protein unc-93 homolog B1 | Unc93b1 | E9PYK0 | 1 |
| Protein unc-93 homolog B1 | Unc93b1 | E9Q8P6 | 1 |
| Protein virilizer homolog | Kiaa1429 | A2AIV2 | 1 |
| Protein Wiz (Fragment) | Wiz | F6ZBR8 | 1 |
| Protein Wiz (Widely-interspaced zinc finger-containing protein) | Wiz | O88286 | 1 |
| Protein Wnt | Wnt7b | E9Q5E3 | 1 |
| Protein Wnt-2b (Protein Wnt-13) | Wnt2b Wnt13 | O70283 | 1 |
| Protein YIPF3 (Killer lineage protein 1) (YIP1 family member 3) [Cleaved into: Protein YIPF3, N-terminally processed] | Yipf3 D17Wsu94e Klip1 | Q3UDR8 | 1 |
| Protein YIPF5 (YIP1 family member 5) (YPT-interacting protein 1 A) | Yipf5 Yip1a | Q9EQQ2 | 1 |
| Protein yippee-like 5 | Ypel5 | P62700 | 1 |
| Protein zwilch homolog | Zwilch | H3BJ52 | 1 |
| Protein zwilch homolog (Zwilch, kinetochore associated, homolog (Drosophila)) | Zwilch mCG_12790 | G3X9Z0 | 1 |
| Protein zyg-11 homolog B | Zyg11b Kiaa1730 | Q3UFS0 | 1 |
| Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) | Pcmt1 | E9PWE0 | 1 |
| Protein-L-isoaspartate(D-aspartate) O-methyltransferase (Fragment) | Pcmt1 | F6V9F1 | 1 |
| Protein-serine/threonine kinase (EC 2.7.11.-) | Grk2 Adrbk1 | Q7TS64 | 1 |
| Protein-serine/threonine kinase (EC 2.7.11.-) | Grk6 Gprk6 GRK6 GRK6-C mCG_3177 | Q9EP84 | 1 |
| Protein-tyrosine kinase 2-beta (Putative uncharacterized protein) | Ptk2b | Q3UDE9 | 1 |
| Protein-tyrosine sulfotransferase 1 (EC 2.8.2.20) (Tyrosylprotein sulfotransferase 1) (TPST-1) | Tpst1 | O70281 | 1 |
| Protein-tyrosine sulfotransferase 2 (EC 2.8.2.20) (Tyrosylprotein sulfotransferase 2) (TPST-2) | Tpst2 D5ucla3 | O88856 | 1 |
| Protocadherin 1 (Fragment) | Pcdh1 | F7BJK1 | 1 |
| Protocadherin 18 | Pcdh18 Kiaa1562 | Q8VHR0 | 1 |
| Protocadherin 7 (Protocadherin 7, isoform CRA_d) | Pcdh7 mCG_9825 | A2RS43 | 1 |
| Protocadherin beta 15 (Putative uncharacterized protein) | Pcdhb15 mCG_141293 | Q91Y04 | 1 |
| Protocadherin Fat 2 (FAT tumor suppressor homolog 2) | Fat2 Fath2 Kiaa0811 | Q5F226 | 1 |
| Protocadherin Fat 3 (FAT tumor suppressor homolog 3) | Fat3 Gm1132 Gm510 | Q8BNA6 | 1 |
| Protocadherin-16 (Protein Dchs1) (Protein dachsous homolog 1) | Dchs1 | E9PVD3 | 1 |
| Pseudouridylate synthase 7 homolog-like protein (EC 5.4.99.-) | Pus7l | Q8CE46 | 1 |
| PTB domain-containing engulfment adapter protein 1 | Gulp1 | E0CXC5 | 1 |
| Pumilio homolog 1 | Pum1 Kiaa0099 | Q80U78 | 1 |
| Pumilio homolog 1 | Pum1 | E9Q6M7 | 1 |
| Pumilio homolog 1 (Putative uncharacterized protein) | Pum1 | Q3TTW5 | 1 |
| Pumilio homolog 2 (Putative uncharacterized protein) | Pum2 | Q3TQ29 | 1 |
| Pumilio homolog 2 (Putative uncharacterized protein) | Pum2 | Q3UR91 | 1 |
| Purine nucleoside phosphorylase (EC 2.4.2.1) (Inosine-guanosine phosphorylase) | Pnp2 Pnp | Q9D8C9 | 1 |
| Putative ATP-dependent RNA helicase DHX33 (EC 3.6.4.13) (DEAH box protein 33) | Dhx33 | Q80VY9 | 1 |
| Putative deoxyribonuclease TATDN1 (EC 3.1.21.-) | Tatdn1 | Q6P8M1 | 1 |
| Putative E3 ubiquitin-protein ligase UBR7 (EC 2.3.2.27) (N-recognin-7) (RING-type E3 ubiquitin transferase UBR7) | Ubr7 | Q8BU04 | 1 |
| Putative glycerol kinase 5 (GK 5) (Glycerokinase 5) (EC 2.7.1.30) (ATP:glycerol 3-phosphotransferase 5) | Gk5 | Q8BX05 | 1 |
| Putative hexokinase HKDC1 (EC 2.7.1.1) (Hexokinase domain-containing protein 1) | Hkdc1 | Q91W97 | 1 |
| Putative homeodomain transcription factor 1 (Fragment) | Phtf1 | D3YTP5 | 1 |
| Putative methyltransferase C9orf114 homolog (EC 2.1.1.-) (Centromere protein 32) (CENP-32) (Kinetochore-associated protein) (SPOUT domain-containing methyltransferase 1) | Spout1 D2Wsu81e | Q3UHX9 | 1 |
| Putative oxidoreductase GLYR1 (RIKEN cDNA 3930401K13) | Glyr1 3930401K13Rik mCG_128736 | D3YYT1 | 1 |
| Putative pheromone receptor | Vmn2r37 V2r14 VR14 | O35202 | 1 |
| Putative Polycomb group protein ASXL3 (Additional sex combs-like protein 3) | Asxl3 | Q8C4A5 | 1 |
| Putative RNA-binding protein Luc7-like 1 (Fragment) | Luc7l | D3Z765 | 1 |
| Putative RNA-binding protein Luc7-like 1 (Fragment) | Luc7l | F6QU81 | 1 |
| Putative sodium-coupled neutral amino acid transporter 10 | Slc38a10 | J3QNE8 | 1 |
| Putative sodium-coupled neutral amino acid transporter 10 (Solute carrier family 38 member 10) | Slc38a10 | Q5I012 | 1 |
| Putative uncharacterized protein | Ifit3b I830012O16Rik Ifit3 | Q8BPC3 | 1 |
| Putative uncharacterized protein | Depdc5 | Q8BVE2 | 1 |
| Putative uncharacterized protein | 0 | Q8BZ90 | 1 |
| Putative uncharacterized protein | Tnip3 | Q8BZU4 | 1 |
| Putative uncharacterized protein | E330037G11Rik | Q8C2V4 | 1 |
| Putative uncharacterized protein | A730089K16Rik | Q8C904 | 1 |
| Putative uncharacterized protein | Myo3b | Q8C9Z9 | 1 |
| Putative uncharacterized protein | Adamts9 | Q8CDB8 | 1 |
| Putative uncharacterized protein | Mis18a 2610039C10Rik | Q9CXR6 | 1 |
| Putative uncharacterized protein | 0 | Q9D2M4 | 1 |
| Putative uncharacterized protein | Tex21 | Q9D4L8 | 1 |
| Putative uncharacterized protein | Nat8f4 1700019G17Rik | Q9DA67 | 1 |
| Putative uncharacterized protein | Ankrd36 Ankrd48 | Q9DAK0 | 1 |
| Putative uncharacterized protein | Cct3 | Q3TBM6 | 1 |
| Putative uncharacterized protein | Trap1 | Q3TK29 | 1 |
| Putative uncharacterized protein | Nid2 | Q3TPN0 | 1 |
| Putative uncharacterized protein | Pcolce | Q3TX39 | 1 |
| Putative uncharacterized protein | Emilin1 | Q3U254 | 1 |
| Putative uncharacterized protein | Hist1h1d | Q3U292 | 1 |
| Putative uncharacterized protein | Eef2 | Q8BMA8 | 1 |