| 30S ribosomal protein S6 | rpsF NGO0581 | Q5F925 | 4 |
| 30S ribosomal protein S6 | rpsF ECUMN_4733 | B7NGD4 | 4 |
| 30S ribosomal protein S7 | rpsG NGO1844 | Q5F5S2 | 4 |
| 30S ribosomal protein S7 | rpsG LMRG_02200 | A0A0H3GFF7 | 4 |
| 30S ribosomal protein S8 | rpsH NGO1826 | Q5F5U1 | 4 |
| 30S ribosomal protein S9 | rpsI NGO2025 | Q5F5A4 | 4 |
| 4-hydroxy-tetrahydrodipicolinate reductase (HTPA reductase) (EC 1.17.1.8) | dapB PA4759 | P38103 | 4 |
| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase (MTA/SAH nucleosidase) (MTAN) (EC 3.2.2.9) (5'-methylthioadenosine nucleosidase) (MTA nucleosidase) (S-adenosylhomocysteine nucleosidase) (AdoHcy nucleosidase) (SAH nucleosidase) (SRH nucleosidase) | mtnN NGO_0345 | Q5F9P8 | 4 |
| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase (MTA/SAH nucleosidase) (MTAN) (EC 3.2.2.9) (5'-methylthioadenosine nucleosidase) (MTA nucleosidase) (S-adenosylhomocysteine nucleosidase) (AdoHcy nucleosidase) (SAH nucleosidase) (SRH nucleosidase) | mtnN Ec53638_1151 | A0A0E1T593 | 4 |
| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Cobalamin-independent methionine synthase) (Methionine synthase, vitamin-B12 independent isozyme) | metE NGO0928 | Q5F863 | 4 |
| 50S ribosomal protein L1 | rplA APU18_12880 BE932_19370 ERS085406_04587 ERS085411_00351 SY51_22895 | A0A061YFJ4 | 4 |
| 50S ribosomal protein L10 | rplJ NGO1853 | Q5F5R3 | 4 |
| 50S ribosomal protein L11 | rplK NGO1855 | Q5F5R1 | 4 |
| 50S ribosomal protein L13 | rplM NGO2024 | Q5F5A5 | 4 |
| 50S ribosomal protein L13 | rplM PA4433 | Q9HVY2 | 4 |
| 50S ribosomal protein L14 | rplN NGO1829 | Q5F5T7 | 4 |
| 50S ribosomal protein L15 | rplO NGO1823 | Q5F5U6 | 4 |
| 50S ribosomal protein L15 | rplO CKO_04713 | A8AQJ5 | 4 |
| 50S ribosomal protein L16 | rplP NGO1831.1 NGO18311 | Q5F5T4 | 4 |
| 50S ribosomal protein L17 | rplQ NGO1817 | Q5F5V3 | 4 |
| 50S ribosomal protein L18 | rplR NGO1824.1 | Q5F5U3 | 4 |
| 50S ribosomal protein L19 | rplS NGO0171 | Q5FA60 | 4 |
| 50S ribosomal protein L19 | rplS EcE24377A_2890 | A7ZQ46 | 4 |
| 50S ribosomal protein L2 | rplB NGO1835 | Q5F5T0 | 4 |
| 50S ribosomal protein L20 | rplT NGO0298 | Q5F9U1 | 4 |
| 50S ribosomal protein L21 | rplU NGO1676 | Q5F686 | 4 |
| 50S ribosomal protein L21 | rplU LMRG_01428 | A0A0H3GH48 | 4 |
| 50S ribosomal protein L22 | rplV NGO1833 | Q5F5T2 | 4 |
| 50S ribosomal protein L24 | rplX PA4252 | Q9HWE6 | 4 |
| 50S ribosomal protein L25 (General stress protein CTC) | rplY ctc NGO0442 | Q5F9F4 | 4 |
| 50S ribosomal protein L28 | rpmB NGO1680 | Q5F682 | 4 |
| 50S ribosomal protein L29 | rpmC PA4255 | Q9HWE3 | 4 |
| 50S ribosomal protein L3 | rplC NGO1838 | Q5F5S7 | 4 |
| 50S ribosomal protein L3 glutamine methyltransferase (L3 MTase) (EC 2.1.1.298) (N5-glutamine methyltransferase PrmB) | prmB AKG99_12340 APT94_13835 BE949_08905 BE957_11365 BE963_27470 BIQ85_13295 BK248_00615 BK383_00015 BMT94_11045 BMT97_08730 BUE82_06880 BV389_03070 BXT93_09920 ERS139235_00403 HMPREF3040_00891 SM09_02498 UN91_13490 | A0A066R1F6 | 4 |
| 50S ribosomal protein L30 | rpmD NGO1823.1 NGO18231 | Q5F5U5 | 4 |
| 50S ribosomal protein L34 | rpmH NGO2182 | Q5F4W2 | 4 |
| 50S ribosomal protein L35 | rpmI NGO0297 | Q5F9U2 | 4 |
| 50S ribosomal protein L4 | rplD NGO1837 | Q5F5S8 | 4 |
| 50S ribosomal protein L5 | rplE NGO1827 | Q5F5T9 | 4 |
| 50S ribosomal protein L6 | rplF NGO1825 | Q5F5U2 | 4 |
| 50S ribosomal protein L7/L12 | rplL NGO1852 | Q5F5R4 | 4 |
| 50S ribosomal protein L9 | rplI NGO0584 | Q5F922 | 4 |
| 6,7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (EC 2.5.1.78) | ribH NGO0257 | Q5F9X9 | 4 |
| 6-N-hydroxylaminopurine resistance protein | yiiM PGD_03119 | A0A024L6P0 | 4 |
| 60 kDa chaperonin (63 kDa stress protein) (GSP63) (GroEL protein) (HSP60) (Protein Cpn60) | groL groEL hsp63 mopA NMB1972 | P42385 | 4 |
| 60 kDa chaperonin (GroEL protein) (Protein Cpn60) | groL groEL mopA b4143 JW4103 | P0A6F5 | 4 |
| 60 kDa chaperonin (GroEL protein) (Protein Cpn60) | groL groEL NGO2095 | Q5F541 | 4 |
| 60 kDa chaperonin (GroEL protein) (Protein Cpn60) | groL groEL Smlt4214 | B2FIU9 | 4 |
| 60 kDa chaperonin (GroEL protein) (Protein Cpn60) | groL groEL LMRG_01218 | A0A0H3GLZ0 | 4 |
| ABC transport system | LMRG_00840 | A0A0H3GBZ4 | 4 |
| ABC transporter | NGO_2121 | Q5F518 | 4 |
| ABC transporter ATP-binding protein | NGO_1573 | Q5F6I5 | 4 |
| ABC transporter ATP-binding protein | NGO_0764 | Q5F8K8 | 4 |
| ABC transporter substrate-binding protein | NGO_1152 | Q5F7L8 | 4 |
| ABC transporter substrate-binding protein | NGO_2056 | Q5F574 | 4 |
| ABC transporter substrate-binding protein | NGO_2014 | Q5F5B5 | 4 |
| ABC transporter substrate-binding protein | NGO_0168 | Q5FA63 | 4 |
| ABC transporter substrate-binding protein | NGO_1440 | Q5F6V5 | 4 |
| ABC transporter substrate-binding protein-oligopeptide transport | amiA spr1707 | Q8DNI1 | 4 |
| ABC transporter substrate-binding protein-sugar transport | ABC-SBP spr1527 | Q8DNU8 | 4 |
| ABC-2 type transport system ATP-binding protein | LMRG_01330 | A0A0H3GGP8 | 4 |
| Acetate kinase (EC 2.7.2.1) (Acetokinase) | ackA NGO_0977 | Q5F824 | 4 |
| Acetolactate synthase (EC 2.2.1.6) | NGO_1236 | Q5F7E2 | 4 |
| Acetyl-CoA carboxylase (Acetyl-CoA carboxylase biotin carboxylase subunit) (EC 6.4.1.2) | A4T50_10335 BE932_15175 SY51_18685 WM48_18040 | A0A067HC32 | 4 |
| Acetyl-CoA carboxylase (EC 6.4.1.2) | NGO_0044 | Q5FAH6 | 4 |
| Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (ACCase subunit alpha) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (EC 6.4.1.2) | accA NGO0821 | Q5F8F5 | 4 |
| Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (ACCase subunit beta) (Acetyl-CoA carboxylase carboxyltransferase subunit beta) (EC 6.4.1.2) | accD NGO_0249 | Q5F9Y5 | 4 |
| Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (ACCase subunit beta) (Acetyl-CoA carboxylase carboxyltransferase subunit beta) (EC 6.4.1.2) | accD EcE24377A_2610 | A7ZPD1 | 4 |
| Acetyltransferase (N-acetyltransferase) | BE932_14680 SY51_18205 | A0A066SQ50 | 4 |
| Acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) | NGO_0564 | Q5F940 | 4 |
| Aconitate hydratase B (EC 4.2.1.3) (EC 4.2.1.99) (2-methylisocitrate dehydratase) | NGO_1231 | Q5F7E7 | 4 |
| Acyl carrier protein (ACP) | acpP NGO1762 | Q5F604 | 4 |
| Acyl carrier protein 1 (ACP 1) | acpP1 acpP PA2966 | O54439 | 4 |
| Acyl-CoA thioesterase (Acyl-CoA thioesterase II) | AUQ13_18240 BET08_25860 BK337_01765 BUE81_06485 UN91_18400 | A0A066QW62 | 4 |
| Acyl-CoA thioesterase I (Multifunctional acyl-CoA thioesterase 1 and protease I and lysophospholipase L1) (EC 3.1.1.5) (EC 3.1.2.-) (Multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1) | tesA EC3234A_4c01620 ERS085365_02339 ERS085366_04291 ERS085374_02271 ERS085379_01104 ERS085386_01215 ERS085416_01865 ERS139211_01980 ERS139235_01657 ERS150873_01755 ERS150876_00673 SK85_00518 SM09_01285 | A0A090LDD5 | 4 |
| Adenylosuccinate lyase (ASL) (EC 4.3.2.2) (Adenylosuccinase) | NGO_1711 | Q5F655 | 4 |
| Adenylosuccinate synthetase (AMPSase) (AdSS) (EC 6.3.4.4) (IMP--aspartate ligase) | purA NGO0398 | Q5F9J5 | 4 |
| Adhesin | NGO_2105 | Q5F531 | 4 |
| Adhesin MafA 1/4 | mafA1 NGO1067; mafA4 NGO1972 | Q5F5F6 | 4 |
| Adhesin MafA 2/3 | mafA2 NGO1393; mafA3 NGO1584 | Q5F6H4 | 4 |
| Adhesin/virulence factor Hek | hek | Q93LE3 | 4 |
| Aerotaxis receptor Aer | aer PA1561 | Q9I3F6 | 4 |
| Agmatinase (EC 3.5.3.11) (Agmatine ureohydrolase) (AUH) | speB NGO1486 | Q5F6R3 | 4 |
| Alanine--tRNA ligase (EC 6.1.1.7) (Alanyl-tRNA synthetase) (AlaRS) | alaS NGO1254 | Q5F7C4 | 4 |
| Aldehyde dehydrogenase (Aldehyde dehydrogenase B) (Lactaldehyde dehydrogenase) (EC 1.2.1.-) | aldB A4T50_12230 A5958_10990 A9R57_20180 AA102_10090 AC789_1c39650 ACN77_01320 ACN81_12100 ACU90_14860 AM270_16210 AML07_21740 APZ14_23720 BE957_04300 BE963_09080 BHS81_21450 BHS87_20140 BJJ90_00640 BK248_14995 BK251_16245 BK292_09470 BMT49_23465 BMT61_11795 BMT97_18580 ERS085365_04047 ERS085374_04287 ERS085379_02911 ERS085416_01753 ERS139211_03752 ERS150873_04213 ERS150876_01984 FORC28_0193 GJ11_23030 GJ12_22350 HW42_22770 PU06_09810 RG28_23100 UN86_17935 WM48_19810 WQ89_12995 | A0A061K0L8 | 4 |
| Altronate oxidoreductase (EC 1.1.1.58) (Tagaturonate dehydrogenase) (Tagaturonate reductase) | uxaB BY96_02090 | A0A027U575 | 4 |
| Amino acid ABC transporter permease | NGO_2011 | Q5F5B8 | 4 |
| Amino acid ABC transporter substrate-binding protein | NGO_0372 | Q5F9M1 | 4 |
| Amino acid ABC transporter, periplasmic amino acid-binding protein | NMB0787 | Q9K035 | 4 |
| Amino acid ABC transporter, periplasmic amino acid-binding protein | NMB1612 | Q9JYF0 | 4 |
| Amino acid ABC transporter, periplasmic binding protein (YckK) | HP_0940 | O25594 | 4 |
| Aminobenzoate synthetase | NGO_2112 | Q5F525 | 4 |
| Aminomethyltransferase (EC 2.1.2.10) (Glycine cleavage system T protein) | gcvT EcSMS35_3037 | B1LDA5 | 4 |
| Aminopeptidase N | pepN PA3083 | Q9HZC5 | 4 |
| Aminotransferase (EC 2.6.1.-) | NGO_1452 | Q5F6U3 | 4 |
| Anthranilate phosphoribosyltransferase (EC 2.4.2.18) | trpD NGO1203 | Q5F7H5 | 4 |
| Anti-adapter protein IraP | iraP EcE24377A_0409 | A7ZID1 | 4 |
| Apolipoprotein N-acyltransferase (ALP N-acyltransferase) (EC 2.3.1.-) (Copper homeostasis protein CutE homolog) | lnt cutE PA3984 | Q9ZI86 | 4 |
| Arabinose 5-phosphate isomerase (API) (EC 5.3.1.13) | A5958_13045 UN86_15350 | A0A0F3T3G6 | 4 |
| Arginine ABC transporter substrate-binding protein | BE932_28015 SY51_04420 | A0A061KUD7 | 4 |