| Probable regulatory protein | SPy_0851 | Q9A0B4 | 1 |
| Probable Resistance-Nodulation-Cell Division (RND) efflux transporter | PA3676 | Q9HXW4 | 1 |
| Probable Resistance-Nodulation-Cell Division (RND) efflux transporter | PA0158 | Q9I6X4 | 1 |
| Probable Resistance-Nodulation-Cell Division (RND) efflux transporter | PA2526 | Q9I0V7 | 1 |
| Probable Resistance-Nodulation-Cell Division (RND) efflux transporter | PA4375 | Q9HW27 | 1 |
| Probable restriction-modification system protein | PA2735 | Q9I0A7 | 1 |
| Probable Sec-independent protein translocase protein TatE | tatA tatE EDWATA_03132 | D4F8N2 | 1 |
| Probable septum site-determining protein MinC | minC OOM_0314 | I2AXG5 | 1 |
| Probable serine protease PepA (Serine proteinase) (MTB32A) | pepA Rv0125 | O07175 | 1 |
| Probable short-chain dehydrogenase | PA0182 | Q9I6V0 | 1 |
| Probable short-chain dehydrogenase | PA2918 | Q9HZS9 | 1 |
| Probable short-chain dehydrogenase | PA3173 | Q9HZ61 | 1 |
| Probable short-chain dehydrogenase | PA3427 | Q9HYH8 | 1 |
| Probable short-chain dehydrogenase | PA5521 | Q9HT52 | 1 |
| Probable short-chain dehydrogenase | PA3277 | Q9HYW4 | 1 |
| Probable short-chain dehydrogenase (EC 1.-.-.-) | ybbO YPO3081 | Q7CJZ4 | 1 |
| Probable sigma-70 factor, ECF subfamily | PA0149 | Q9I6Y3 | 1 |
| Probable sodium:solute symporter | PA3234 | Q9HZ06 | 1 |
| Probable soluble cytochrome b562 1 (Cytochrome b-562 1) | cybC1 cybC YPO3320 y0869 YP_0366 | Q9X6B1 | 1 |
| Probable succinate dehydrogenase [iron-sulfur subunit] (Succinic dehydrogenase) | Rv0248c | O53670 | 1 |
| Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit A (EC 2.8.3.5) (Succinyl-CoA:3-oxoacid CoA-transferase) (OXCT A) | scoA Rv2504c MTCY07A7.10c | P9WPW5 | 1 |
| Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit B (EC 2.8.3.5) (OXCT B) (Succinyl-CoA:3-oxoacid CoA-transferase) | scoB Rv2503c MTCY07A7.09c | P9WPW3 | 1 |
| Probable sugar ABC transporter, ATP-binding protein | VSAK1_10873 | A6D222 | 1 |
| Probable sulfatase | Rv0296c | Q6MX51 | 1 |
| Probable sulfite or nitrite reductase | PA4130 | Q9HWQ1 | 1 |
| Probable thiol peroxidase (EC 1.11.1.-) | tpx B195_21915 | M5QEC5 | 1 |
| Probable thiol peroxidase (EC 1.11.1.-) | tpx PG_1729 | Q7MU37 | 1 |
| Probable thiol peroxidase (EC 1.11.1.-) | tpx YPO2342 y1990 YP_2129 | Q8ZE42 | 1 |
| Probable thiol peroxidase (EC 1.11.1.-) | tpx Rv1932 MTCY09F9.32c | P9WG35 | 1 |
| Probable thiol peroxidase (EC 1.11.1.-) | tpx SC1083_1924 | G4AAP8 | 1 |
| Probable thiol peroxidase (EC 1.11.1.-) | tpx HPSD74_1314 | U4SIZ6 | 1 |
| Probable thiol peroxidase (EC 1.11.1.-) (Superoxide-inducible protein 8) (SOI8) | tpx ytgI BSU29490 | P80864 | 1 |
| Probable tonB-dependent receptor | yncD KPN_01909 | A6T9R9 | 1 |
| Probable TonB-dependent receptor | PA1322 | Q9I422 | 1 |
| Probable TonB-dependent receptor NMB0964 | NMB0964 | Q9JZN9 | 1 |
| Probable transaldolase (EC 2.2.1.2) | tal MXAN_5922 | Q1CZW4 | 1 |
| Probable transaldolase (EC 2.2.1.2) | tal SPy_1678 M5005_Spy1376 | P66959 | 1 |
| Probable transaldolase (EC 2.2.1.2) | tal CD630_23290 | Q185K3 | 1 |
| Probable transcarboxylase subunit | PA5435 | Q9HTD1 | 1 |
| Probable transcriptional regulator | PA3458 | Q9HYE8 | 1 |
| Probable transcriptional regulator | chpD PA0416 | G3XCU1 | 1 |
| Probable transcriptional regulator | PA1269 | Q9I475 | 1 |
| Probable transcriptional regulator | PA3124 | Q9HZA0 | 1 |
| Probable transcriptional regulator | PA0906 | Q9I551 | 1 |
| Probable transcriptional regulator | PA1504 | Q9I3K8 | 1 |
| Probable transcriptional regulator | PA2877 | Q9HZX0 | 1 |
| Probable transcriptional regulator | PA3034 | Q9HZH4 | 1 |
| Probable transcriptional regulatory protein SPy_0316/M5005_Spy0269 | SPy_0316 M5005_Spy0269 | P67188 | 1 |
| Probable transglycosylase IsaA (EC 3.2.-.-) (Immunodominant staphylococcal antigen A) | isaA SAOUHSC_02887 | Q2FV52 | 1 |
| Probable transporter | PA1651 | Q9I374 | 1 |
| Probable triacylglyceride transporter Rv1410c (MFS-type drug efflux transporter P55) | Rv1410c | P9WJY3 | 1 |
| Probable tRNA sulfurtransferase (EC 2.8.1.4) (Sulfur carrier protein ThiS sulfurtransferase) (Thiamine biosynthesis protein ThiI) (tRNA 4-thiouridine synthase) | thiI SPy_0817 M5005_Spy0631 | Q9A0D8 | 1 |
| Probable two-component response regulator | PA0756 | Q9I5H3 | 1 |
| Probable two-component sensor | PA3271 | Q9HYX0 | 1 |
| Probable two-component sensor | PA5484 | Q9HT87 | 1 |
| Probable two-component sensor | PA1458 | G3XCT6 | 1 |
| Probable type II secretion system protein | PA1382 | Q9I3W2 | 1 |
| Probable zinc protease PqqL (EC 3.4.24.-) | pqqL yddC b1494 JW1489 | P31828 | 1 |
| Proline iminopeptidase (PIP) (EC 3.4.11.5) (Prolyl aminopeptidase) | pip FTN_1731 | A0Q8L8 | 1 |
| Proline--tRNA ligase (EC 6.1.1.15) (Global RNA synthesis factor) (Prolyl-tRNA synthetase) (ProRS) | proS drpA b0194 JW0190 | P16659 | 1 |
| Proline--tRNA ligase (EC 6.1.1.15) (Prolyl-tRNA synthetase) (ProRS) | proS MW1146 | Q7A120 | 1 |
| Proline--tRNA ligase (EC 6.1.1.15) (Prolyl-tRNA synthetase) (ProRS) | proS jhp_0223 | Q9ZMJ6 | 1 |
| Proline--tRNA ligase (EC 6.1.1.15) (Prolyl-tRNA synthetase) (ProRS) | proS FTN_1377 | A0Q7N3 | 1 |
| Proline--tRNA ligase (EC 6.1.1.15) (Prolyl-tRNA synthetase) (ProRS) | proS Cj0543 | Q9PHX1 | 1 |
| Proline--tRNA ligase (EC 6.1.1.15) (Prolyl-tRNA synthetase) (ProRS) | proS B195_10711 | M5QGH6 | 1 |
| Proline--tRNA ligase (EC 6.1.1.15) (Prolyl-tRNA synthetase) (ProRS) | proS YPO1068 y3109 YP_2781 | Q7CH25 | 1 |
| Proline--tRNA ligase (EC 6.1.1.15) (Prolyl-tRNA synthetase) (ProRS) | proS SF0185 S0187 | Q83MC8 | 1 |
| Proline--tRNA ligase (EC 6.1.1.15) (Prolyl-tRNA synthetase) (ProRS) | proS Rv2845c MTCY24A1.12 | P9WFT9 | 1 |
| Proline--tRNA ligase (EC 6.1.1.15) (Prolyl-tRNA synthetase) (ProRS) | proS SPy_1962 M5005_Spy1673 | Q99XY4 | 1 |
| Proline--tRNA ligase (EC 6.1.1.15) (Prolyl-tRNA synthetase) (ProRS) | proS SAOUHSC_01240 | Q2G1Z4 | 1 |
| Proline--tRNA ligase 2 (EC 6.1.1.15) (Prolyl-tRNA synthetase 2) (ProRS 2) | proS2 CD630_00500 | Q18CD7 | 1 |
| Proline-rich 28 kDa antigen | mtc28 Rv0040c MTCY21D4.03c | P9WIM9 | 1 |
| Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) | lgt PA0341 | Q9I6F2 | 1 |
| Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) | lgt VSAK1_11128 | A6D9G6 | 1 |
| Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) | lgt Smlt0812 | B2FPF9 | 1 |
| Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) | lgt SPy_0585 M5005_Spy0485 | P60965 | 1 |
| Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) | lgt SAOUHSC_00782 | Q2G044 | 1 |
| Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) | lgt FTT_1228 | Q5NFK6 | 1 |
| Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) (Spore germination protein GerF) | lgt gerF BSU34990 | O34752 | 1 |
| Prophage antitermination protein Q homolog QuuD (Antitermination protein Q homolog from lambdoid prophage DLP12) | quuD ybcQ b0551 JW0539 | Q47274 | 1 |
| Prophage maintenance system killer protein (DOC) | FTN_0284 | A0Q4M6 | 1 |
| Propionate kinase (EC 2.7.2.15) | tdcD KPN_02293 | A6TAU8 | 1 |
| Propionyl-CoA carboxylase | B195_07690 | M5QMT2 | 1 |
| Propionyl-CoA carboxylase, beta subunit (EC 6.4.1.3) | pccB MXAN_1113 | Q1DDA0 | 1 |
| Protease | VC_A0223 | Q9KMU6 | 1 |
| Protease (EC 3.4.-.-) | spr1284 | Q8DP94 | 1 |
| Protease 4 (EC 3.4.21.-) (Endopeptidase IV) (Protease IV) (Signal peptide peptidase) | VS_0937 | B7VLB7 | 1 |
| Protease 4 (EC 3.4.21.-) (Endopeptidase IV) (Protease IV) (Signal peptide peptidase) | SC1083_0761 | G4A7G5 | 1 |
| Protease 4 (EC 3.4.21.-) (Endopeptidase IV) (Protease IV) (Signal peptide peptidase) | VSAK1_03489 | A6CXJ0 | 1 |
| Protease 7 (EC 3.4.23.49) (Omptin) (Outer membrane protein 3B) (Protease A) (Protease VII) | ompT Z1931 ECs1663 | P58603 | 1 |
| Protease degQ | VS_0426 | B7VIY0 | 1 |
| Protease DegQ | SC1083_0684 | G4A792 | 1 |
| PROTEASE DO | htrA jhp_0405 | Q9ZM18 | 1 |
| Protease DO | VC_0566 | Q9KUF5 | 1 |
| Protease DO family protein (EC 3.4.21.-) | MXAN_0934 | Q1DDS8 | 1 |
| Protease HtpX (EC 3.4.24.-) (Heat shock protein HtpX) | htpX HPSD74_0979 | U4SKM6 | 1 |
| Protease HtpX (EC 3.4.24.-) (Heat shock protein HtpX) | htpX VSAK1_00110 | A6D5I5 | 1 |
| Protease HtpX (EC 3.4.24.-) (Heat shock protein HtpX) | htpX Smlt3323 | B2FN30 | 1 |
| Protease HtpX homolog (EC 3.4.24.-) | htpX NMB0822 | Q9K006 | 1 |
| Protease HtpX homolog (EC 3.4.24.-) | htpX SPy_0331 M5005_Spy0280 | Q9A1D5 | 1 |