| Deleted. | 0 | D1GND3 | 3 |
| Deleted. | 0 | D1GP33 | 3 |
| Deleted. | 0 | D1GRA9 | 3 |
| Deleted. | 0 | E0TPP1 | 3 |
| Deleted. | 0 | E0TLS7 | 3 |
| Deleted. | 0 | E0TQ32 | 3 |
| Deleted. | 0 | E0STZ5 | 3 |
| Deleted. | 0 | E0SX64 | 3 |
| Deleted. | 0 | B5E603 | 3 |
| Deleted. | 0 | B5E6T2 | 3 |
| Deleted. | 0 | B5E4Y5 | 3 |
| Deleted. | 0 | B8ZLN1 | 3 |
| Deleted. | 0 | Q2MGF7 | 3 |
| Deleted. | 0 | Q97NH7 | 3 |
| Deleted. | 0 | E0TRH7 | 3 |
| Deleted. | 0 | E0SYE4 | 3 |
| Deleted. | 0 | C1CP01 | 3 |
| Deleted. | 0 | D1GNE7 | 3 |
| Deleted. | 0 | D1GSK0 | 3 |
| Deleted. | 0 | D1GSK1 | 3 |
| Deleted. | 0 | D1GSJ9 | 3 |
| Deleted. | 0 | A0A025FZ31 | 3 |
| Deleted. | 0 | A0A066T0N8 | 3 |
| Deleted. | 0 | A0A0E3MW47 | 3 |
| Deleted. | 0 | A0A0D8W0F4 | 3 |
| Deleted. | 0 | A0A0X4ZZR0 | 3 |
| Deleted. | 0 | A0A0D8VYX3 | 3 |
| Deleted. | 0 | A0A0E3MX44 | 3 |
| Deleted. | 0 | A0A075L848 | 3 |
| Deleted. | 0 | A0A0B0XAB5 | 3 |
| Deleted. | 0 | A0A0E2U1Q6 | 3 |
| Deleted. | 0 | A0A0F6GKK5 | 3 |
| Deleted. | 0 | A0A0C2D9V7 | 3 |
| Deleted. | 0 | A0A0D8VYJ9 | 3 |
| Deleted. | 0 | A0A0D8VGY9 | 3 |
| Deleted. | 0 | A0A0E3KE96 | 3 |
| Deleted. | 0 | A0A075LGH1 | 3 |
| Deleted. | 0 | H9UR61 | 3 |
| Deleted. | 0 | A0A075LC57 | 3 |
| Deleted. | 0 | A0A025GK56 | 3 |
| Deleted. | 0 | A0A025FSQ0 | 3 |
| Dihydrofolate reductase (EC 1.5.1.3) | folA_1 folA EC3234A_2c00340 ERS085365_01073 ERS085366_00734 ERS085374_01814 ERS085379_00656 ERS085383_01301 ERS085386_01665 ERS085404_00833 ERS085406_00441 ERS085416_01539 ERS139211_00792 ERS139235_01236 ERS150873_00992 ERS150876_00187 FORC28_5155 MS6198_00560 PGD_03692 SK85_00048 SM09_00790 | A0A024L7M8 | 3 |
| Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (Dihydrolipoamide dehydrogenase) (E3 component of branched-chain alpha-keto acid dehydrogenase complex) (LPD-Val) | lpdV PA2250 | Q9I1L9 | 3 |
| Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (Dihydrolipoamide dehydrogenase) (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Glycine cleavage system L protein) | lpdA lpd b0116 JW0112 | P0A9P0 | 3 |
| Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) (2-oxoglutarate dehydrogenase complex component E2) | sucB Smlt3198 | B2FLD2 | 3 |
| Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) (2-oxoglutarate dehydrogenase complex component E2) (OGDC-E2) (Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex) | sucB b0727 JW0716 | P0AFG6 | 3 |
| Dihydroorotase (DHOase) (EC 3.5.2.3) | pyrC MXAN_3511 | Q1D6L8 | 3 |
| Dihydroorotate dehydrogenase (quinone) (EC 1.3.5.2) (DHOdehase) (DHOD) (DHODase) (Dihydroorotate oxidase) | pyrD ECONIH1_05980 MS6198_10880 | A0A0A1A6K2 | 3 |
| Dihydropteroate synthase type-2 (EC 2.5.1.15) (Dihydropteroate pyrophosphorylase type II) (Dihydropteroate synthase type II) (DHPS) | sulII | P0AC11 | 3 |
| Disulfide bond formation protein D (Disulfide oxidoreductase D) (Thiol-disulfide oxidoreductase D) | bdbD yvgV BSU33480 | O32218 | 3 |
| DNA binding regulator, beta subunit B | hupB PP_2303 | Q88KI7 | 3 |
| DNA polymerase I (EC 2.7.7.7) | polA BX52_07305 | A0A0E2TN73 | 3 |
| DNA protection during starvation protein (EC 1.16.-.-) | dps Cj1534c | Q0P891 | 3 |
| DNA repair protein RecN (Recombination protein N) | recN PA4763 | Q9HV41 | 3 |
| DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I) (Omega-protein) (Relaxing enzyme) (Swivelase) (Untwisting enzyme) | topA PA3011 | Q9HZJ5 | 3 |
| DNA-binding protein | stpA Ec53638_3273 | A0A0E1T7B1 | 3 |
| DNA-binding transcriptional regulator (DeoR faimly transcriptional regulator) | BE932_26485 SY51_02935 | A0A061KSL2 | 3 |
| DNA-directed DNA polymerase (EC 2.7.7.7) | dnaE spr0795 | Q8DQ86 | 3 |
| DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (EC 2.7.7.6) (RNA polymerase subunit beta) (Transcriptase subunit beta) | rpoB FTN_1568 | A0Q867 | 3 |
| DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (EC 2.7.7.6) (RNA polymerase subunit beta) (Transcriptase subunit beta) | rpoB Smlt0898 | B2FQ38 | 3 |
| DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (EC 2.7.7.6) (RNA polymerase subunit beta) (Transcriptase subunit beta) | rpoB EcE24377A_4528 | A7ZUK1 | 3 |
| DNA-directed RNA polymerase subunit beta' (RNAP subunit beta') (EC 2.7.7.6) (RNA polymerase subunit beta') (Transcriptase subunit beta') | rpoC FTN_1567 | A0Q866 | 3 |
| DNA-directed RNA polymerase subunit beta' (RNAP subunit beta') (EC 2.7.7.6) (RNA polymerase subunit beta') (Transcriptase subunit beta') | rpoC PP_0448 | Q88QP1 | 3 |
| dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) | rffG A5958_09955 ACU57_26095 AMK83_07115 ERS085379_03211 UN86_04465 WQ89_13645 WR15_15375 | A0A061KPW2 | 3 |
| DUF4432 domain-containing protein (Deoxyribose mutarotase) | BMT53_10700 JD73_00530 | A0A085P7G2 | 3 |
| ECF RNA polymerase sigma-E factor (RNA polymerase sigma-E factor) (Sigma-24) | rpoE Z3855 ECs3439 | P0AGB8 | 3 |
| EcoE type I restriction modification enzyme M subunit (EC 3.1.21.3) | hsdM spr0449 | Q8DQX1 | 3 |
| Ecotin | eco EL75_1424 EL79_1433 EL80_1455 | A0A090JLU1 | 3 |
| Efem/EfeO family lipoprotein NMB0035 | NMB0035 | Q9K1P6 | 3 |
| Elongation factor 4 (EF-4) (EC 3.6.5.n1) (Ribosomal back-translocase LepA) | lepA EC958_2875 UG58_13975 | W8ZUS1 | 3 |
| Elongation factor G (EF-G) | fusA far fus b3340 JW3302 | P0A6M8 | 3 |
| Elongation factor G (EF-G) | fusA FTN_0237 | A0Q4I1 | 3 |
| Elongation factor G (EF-G) | fusA Cj0493 | Q9PI16 | 3 |
| Elongation factor G (EF-G) | fusA HP_1195 | P56002 | 3 |
| Elongation factor G (EF-G) | fusA Smlt0903 | B2FQ42 | 3 |
| Elongation factor G 1 (EF-G 1) | fusA fusA-1 PP_0451 | Q88QN8 | 3 |
| Elongation factor G 2 (EF-G 2) | fusB fusA2 PA2071 | Q9I244 | 3 |
| Elongation factor Ts (EF-Ts) | tsf EcE24377A_0174 | A7ZHR0 | 3 |
| Elongation factor Tu (EF-Tu) | tufA tufA1 NMB0124; tufB tufA2 NMB0139 | P64027 | 3 |
| Elongation factor Tu (EF-Tu) | tuf FTN_1576 | A0Q874 | 3 |
| Elongation factor Tu (EF-Tu) | tuf tufB Cj0470 | O69303 | 3 |
| Elongation factor Tu (EF-Tu) (P-40) | tuf tufA BSU01130 | P33166 | 3 |
| Elongation factor Tu-A (EF-Tu-A) | tufA tuf-1 PP_0440 | Q88QP8 | 3 |
| Elongation factor Tu-B (EF-Tu-B) | tufB tuf-2 PP_0452 | Q88QN7 | 3 |
| Endolytic peptidoglycan transglycosylase RlpA (EC 4.2.2.-) | rlpA PP_4804 | Q88DM1 | 3 |
| Endolytic peptidoglycan transglycosylase RlpA (EC 4.2.2.-) | rlpA HP_1571 | O26091 | 3 |
| Endolytic peptidoglycan transglycosylase RlpA (EC 4.2.2.-) | rlpA Smlt4051 | B2FUT3 | 3 |
| Endolytic peptidoglycan transglycosylase RlpA (EC 4.2.2.-) (Rare lipoprotein A) | rlpA PA4000 | Q9X6V6 | 3 |
| Endonuclease MutS2 (EC 3.1.-.-) | mutS2 spr0368 | Q8DR26 | 3 |
| Endopeptidase | BX51_19210 | A0A025C7P3 | 3 |
| Endopeptidase (Putative lipoprotein) (EC 3.4.-.-) | nlpC AC067_17865 ACN77_27830 APU18_09625 AWP75_03785 BE932_03985 BK373_05010 BMT49_11120 ERS085366_03027 ERS085406_02850 GJ11_11670 MJ49_22805 PU06_10450 SY51_09515 WR15_13885 | E2QMR9 | 3 |
| Endopeptidase La (EC 3.4.21.53) | PA4576 | Q9HVK8 | 3 |
| Enolase (EC 4.2.1.11) (2-phospho-D-glycerate hydro-lyase) (2-phosphoglycerate dehydratase) | eno Cj1672c | P42448 | 3 |
| Enolase (EC 4.2.1.11) (2-phospho-D-glycerate hydro-lyase) (2-phosphoglycerate dehydratase) | eno spr1036 | Q8DPS0 | 3 |
| Enolase (EC 4.2.1.11) (2-phospho-D-glycerate hydro-lyase) (2-phosphoglycerate dehydratase) | eno BSU33900 | P37869 | 3 |
| Enolase (EC 4.2.1.11) (2-phospho-D-glycerate hydro-lyase) (2-phosphoglycerate dehydratase) | eno EcE24377A_3083 | A7ZQM2 | 3 |
| Esterase EstP (EC 3.1.1.1) (Autotransporter esterase EstP) (Palmitoyl-CoA hydrolase) (EC 3.1.2.2) | estP PP_0418 | Q88QS0 | 3 |
| Fatty acid oxidation complex subunit alpha [Includes: 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35); Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase (EC 4.2.1.17) (EC 5.1.2.3) (EC 5.3.3.8)] | fadB BE932_18600 SY51_21950 | A0A061K6E7 | 3 |
| Fe(3+) dicitrate transport protein FecA (Iron(III) dicitrate transport protein FecA) | fecA b4291 JW4251 | P13036 | 3 |
| Fe/S biogenesis protein NfuA | nfuA EcE24377A_3889 | A7ZSU3 | 3 |